New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3522770	35 (0.690)	3 (0.060)	3/252	NT	6.9%	intergenic (+557/‑140)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	= 3522819	47 (0.960)					intergenic (+606/‑91)	PP_5584/PP_3113	hypothetical protein/transposase

GGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATG  >  NC_002947/3522626‑3522915                                                                                                                                                 |                                                                                                                                                  ggCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATg                                                                                                                                               >  3:53286/1‑149 (MQ=255)           gTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGGGTTCCGCATGTGCTCGGCGTTCAGCCGCGGTGCGGTGGTGCCCCCGCACATGCCGCTGCCAGGGGccg                                                                                                                                     >  6:216865/1‑148 (MQ=255)                        tCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGGGCTGGCCCAGGCCCATGGCGTGCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGGCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCcag                                                                                                                        <  5:216865/149‑1 (MQ=255)                                   ccGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCaatgccaggcctgttgcgcctgctggagcatgcccagg                                                                                                             >  6:83183‑M1/1‑111 (MQ=255)                                        ccAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAgg                                                                                                                    <  4:233597/137‑1 (MQ=255)                                        ccAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAgg                                                                                                                    >  3:233597/1‑137 (MQ=255)                                            ctctTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATTCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACACGCCAGGc                                                                                                     >  4:163505/1‑148 (MQ=255)                                            ctctTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCa                                                                                                                                <  6:40947/121‑1 (MQ=255)                                            ctctTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCa                                                                                                                                >  5:40947/1‑121 (MQ=255)                                                tCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCt                                                                                                        >  1:247849/1‑141 (MQ=255)                                                tCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCt                                                                                                        <  2:247849/141‑1 (MQ=255)                                                  ggCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCaatgccaggcctgttgcgcctgctggagcatgcccaggcccatggcatcggc                                                                                               <  5:83183‑M1/148‑53 (MQ=255)                                                   gCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGTTGCGTTGGTCACCACGCACATGCCaatgccaggcctgttgcgcctgctggagcatgcccaggcccatggcatcggcat                                                                                             <  5:229018‑M1/149‑55 (MQ=255)                                                   gCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGACTGGCATTGGCTc                                                                                             >  4:59661/1‑149 (MQ=255)                                                     caccaGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGt                                                                                           <  4:53286/149‑1 (MQ=255)                                                                   cAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGaa                                                                             >  2:274979/1‑149 (MQ=255)                                                                        tGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGaa                                                                             >  1:208724/1‑144 (MQ=255)                                                                        tGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGaa                                                                             <  2:208724/144‑1 (MQ=255)                                                                          cTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCcaca                                                                      <  5:34283/149‑1 (MQ=255)                                                                           tGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACAt                                                                     >  8:120690/1‑149 (MQ=255)                                                                               ccaggcccaTGGCGTTCAGCATGAGCTCTGCGTACAGCCGCGCTGCGTTGGTCACCACGCACATGCCGATCCCATGGGCCTGGGCATGCTCCAGCACCCGCAACACGCCTGGAATTGGCTCGTAAGCGCTCCATGAACCCCACATTCa                                                                  >  4:169368/1‑148 (MQ=255)                                                                                 aggcccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAg                                                               <  3:163505/149‑1 (MQ=255)                                                                                    cccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTggc                                                                                               >  7:103733‑M2/1‑111 (MQ=255)                                                                                    cccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTggc                                                                                               <  8:103733‑M2/114‑4 (MQ=255)                                                                                    cacaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCTTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAgcg                                                             <  5:147683/146‑1 (MQ=255)                                                                                     ccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCt                                                           <  2:235126/149‑1 (MQ=255)                                                                                      caTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGACGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATAGGCTCGTAAGCGCTGCATGAACCACACATTCAAAGCGCt                                                           >  8:243320/1‑148 (MQ=255)                                                                                        tGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTAc                                                        >  2:85697/1‑149 (MQ=255)                                                                                         ggCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTAcc                                                       >  2:27949/1‑149 (MQ=255)                                                                                                aGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGTCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATccc                                                <  3:59661/149‑1 (MQ=255)                                                                                                aGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATccc                                                <  7:120690/149‑1 (MQ=255)                                                                                                   aTGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGa                                             >  7:160873/1‑149 (MQ=255)                                                                                                       gCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCt                                         <  7:113945/149‑1 (MQ=255)                                                                                                       gCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCt                                         >  4:113396/1‑149 (MQ=255)                                                                                                         tCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCtgt                                       >  8:255593/1‑149 (MQ=255)                                                                                                                          tGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGTTGTGCTCCCGATttctttct                      >  6:156674/1‑149 (MQ=255)                                                                                                                            ctttGCTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCATCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCGATGAACCCCACATTCAAAGCGCTTACCTGTTCCCCGATGCTGTGCTCCCGATTTCTTTCTg                     <  3:169368/146‑1 (MQ=255)                                                                                                                                      cacGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATc                                                  >  8:220971/1‑109 (MQ=255)                                                                                                                                       acGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGAc         >  3:223171/1‑149 (MQ=255)                                                                                                                                        cGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGAc         >  3:286280/1‑148 (MQ=255)                                                                                                                                           acaTGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCat      >  5:32844/1‑148 (MQ=255)                                                                                                                                             aTGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTggcatgtgcgtggtgaccaacgcaacgcggctgaacgccgagcacatgctgaacgccatgggcctgggccagcactttgaacatgtgctggtggc   <  5:229018‑M2/149‑96 (MQ=255)                                                                                                                                              tGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCatgatg  <  4:286280/149‑1 (MQ=255)                                                                                                                                               gccaatgccaggcctgttgcgcctgctggagcatgcccaggcccatggcatcggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatggg                                    >  7:103733‑M1/1‑3 (MQ=255)                                                                                                                                               gccaatgccaggcctgttgcgcctgctggagcatgcccaggcccatggcatcggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatggg                                    <  8:103733‑M1/114‑112 (MQ=255)                                                                                                                                               gCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgggccagcactttgaacatgtgctggtggcc  <  5:83183‑M2/148‑97 (MQ=255)                                                                                                                                                 |                                                                                                                                                  GGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATG  >  NC_002947/3522626‑3522915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.