New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3522770	35 (0.690)	3 (0.060)	3/252	NT	6.9%	intergenic (+557/‑140)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	= 3522819	47 (0.960)					intergenic (+606/‑91)	PP_5584/PP_3113	hypothetical protein/transposase

GCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGCCCGTC  >  NC_002947/3522676‑3522963                                                                                                                                                |                                                                                                                                                  gCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGACTGGCATTGGCTc                                                                                                                                              >  4:59661/1‑149 (MQ=255)   caccaGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGt                                                                                                                                            <  4:53286/149‑1 (MQ=255)                 cAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGaa                                                                                                                              >  2:274979/1‑149 (MQ=255)                      tGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGaa                                                                                                                              >  1:208724/1‑144 (MQ=255)                      tGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGaa                                                                                                                              <  2:208724/144‑1 (MQ=255)                        cTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCcaca                                                                                                                       <  5:34283/149‑1 (MQ=255)                         tGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACAt                                                                                                                      >  8:120690/1‑149 (MQ=255)                             ccaggcccaTGGCGTTCAGCATGAGCTCTGCGTACAGCCGCGCTGCGTTGGTCACCACGCACATGCCGATCCCATGGGCCTGGGCATGCTCCAGCACCCGCAACACGCCTGGAATTGGCTCGTAAGCGCTCCATGAACCCCACATTCa                                                                                                                   >  4:169368/1‑148 (MQ=255)                               aggcccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAg                                                                                                                <  3:163505/149‑1 (MQ=255)                                  cccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTggc                                                                                                                                                <  8:103733‑M2/114‑4 (MQ=255)                                  cccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTggc                                                                                                                                                >  7:103733‑M2/1‑111 (MQ=255)                                  cacaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCTTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAgcg                                                                                                              <  5:147683/146‑1 (MQ=255)                                   ccaTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCt                                                                                                            <  2:235126/149‑1 (MQ=255)                                    caTGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGACGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATAGGCTCGTAAGCGCTGCATGAACCACACATTCAAAGCGCt                                                                                                            >  8:243320/1‑148 (MQ=255)                                      tGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTAc                                                                                                         >  2:85697/1‑149 (MQ=255)                                       ggCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTAcc                                                                                                        >  2:27949/1‑149 (MQ=255)                                              aGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGTCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATccc                                                                                                 <  3:59661/149‑1 (MQ=255)                                              aGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATccc                                                                                                 <  7:120690/149‑1 (MQ=255)                                                 aTGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGa                                                                                              >  7:160873/1‑149 (MQ=255)                                                     gCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCt                                                                                          >  4:113396/1‑149 (MQ=255)                                                     gCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCt                                                                                          <  7:113945/149‑1 (MQ=255)                                                       tCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCtgt                                                                                        >  8:255593/1‑149 (MQ=255)                                                                        tGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGTTGTGCTCCCGAT‑ttctttct                                                                      >  6:156674/1‑149 (MQ=255)                                                                          ctttGCTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCATCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCGATGAACCCCACATTCAAAGCGCTTACCTGTTCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTg                                                                     <  3:169368/146‑1 (MQ=255)                                                                                    cacGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATc                                                                                                   >  8:220971/1‑109 (MQ=255)                                                                                     acGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGAc                                                         >  3:223171/1‑149 (MQ=255)                                                                                      cGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGAc                                                         >  3:286280/1‑148 (MQ=255)                                                                                         acaTGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCat                                                      >  5:32844/1‑148 (MQ=255)                                                                                           aTGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTggcatgtgcgtggtgaccaacgcaacgcggctgaacgccgagcacatgctgaacgccatgggcctgggccagcactttgaacatgtgctggtggc                                                    <  5:229018‑M2/149‑96 (MQ=255)                                                                                            tGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCatgatg                                                  <  4:286280/149‑1 (MQ=255)                                                                                             gCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgggccagcactttgaacatgtgctggtggcc                                                   <  5:83183‑M2/148‑97 (MQ=255)                                                                                                gATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGAc                                              <  7:37629/149‑1 (MQ=255)                                                                                                gATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGAc                                              >  5:222755/1‑149 (MQ=255)                                                                                                gATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGAc                                              >  2:170831/1‑149 (MQ=255)                                                                                                 aTGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTaa                                                                                                                                          <  6:138280/57‑1 (MQ=255)                                                                                                 aTGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTaa                                                                                                                                          >  5:138280/1‑57 (MQ=255)                                                                                                           ccTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgggccagcactttgaacatgtgctggtggccgaagagctggcacgg                                    >  6:83183‑M2/1‑38 (MQ=255)                                                                                                            cTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATGGACTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCaaa                                   >  1:107880/1‑149 (MQ=255)                                                                                                               ggCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGTTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTc                                <  5:156674/148‑1 (MQ=255)                                                                                                               ggCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTc                                <  6:222755/148‑1 (MQ=255)                                                                                                               ggCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTc                                >  3:20047/1‑148 (MQ=255)                                                                                                                 cATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGAc                                         >  4:104394/1‑137 (MQ=255)                                                                                                                        cagcagGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAgtgt                      <  8:160873/149‑1 (MQ=255)                                                                                                                        cagcagGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAgt                        <  3:113396/147‑1 (MQ=255)                                                                                                                          gcagGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTAc                    >  8:63860/1‑149 (MQ=255)                                                                                                                              gcgcAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACctct                <  4:223171/149‑1 (MQ=255)                                                                                                                              gcgcAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACctc                 >  7:268258/1‑148 (MQ=255)                                                                                                                               cgcAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTa               <  8:268258/149‑1 (MQ=255)                                                                                                                                  aacttgCCTGGCATTGGCTCGTAAGCGATCGATGAACCGCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGGCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTAc              <  7:243320/142‑1 (MQ=14)                                                                                                                                   aCAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTAcccc           <  6:32844/149‑1 (MQ=255)                                                                                                                                     aGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTAcccc           >  4:79424/1‑147 (MQ=255)                                                                                                                                       gCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTAc                    <  7:261851/136‑1 (MQ=255)                                                                                                                                       gCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTAc                    >  8:261851/1‑136 (MQ=255)                                                                                                                                          tGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGCCCg    >  6:63739/1‑149 (MQ=39)                                                                                                                                            gCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGCCCGTc  >  8:274058/1‑149 (MQ=38)                                                                                                                                              aTTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACct                  >  3:4145/1‑131 (MQ=37)                                                                                                                                              aTTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACct                  <  4:4145/131‑1 (MQ=37)                                                                                                                                                |                                                                                                                                                  GCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAT‑TTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAGTCGAAAAAGTGTACCTCTACCCCAAGCCCGTC  >  NC_002947/3522676‑3522963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.