New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3538486 =	35 (0.690)	3 (0.060)	3/248	NT	9.0%	coding (308/1116 nt)	PP_5587	hypothetical protein
	?	NC_002947	3538528 =	27 (0.560)					coding (350/1116 nt)	PP_5587	hypothetical protein

TTTCGTTGTAGCGCCCCACCAGGCCAAACCGCCCCCGCTCGGTGGTGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3538536‑3538486 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTGGAG  >  NC_002947/3538528‑3538624                                                                                                                                                       TTTCGTTGTAGCGCCCCACCAGGCCAAACCGCCCCCGCTCGGTGGTGCGCTACAACGAAAGGCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTGGAG  >  1:254021/1‑149     GTTGTAGCGCCCCACCAGGCCAAACCGCCCCCGCTCGGTGGTGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTGGA   >  5:108064/1‑143     GTTGTAGCGCCCCACCAGGCCAAACCGCCCCCGCTCGGTGGTGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTGGA   <  6:108064/143‑1                                                                                                                                                       TTTCGTTGTAGCGCCCCACCAGGCCAAACCGCCCCCGCTCGGTGGTGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3538536‑3538486 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTGGAG  >  NC_002947/3538528‑3538624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.