New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3538486 =	35 (0.690)	3 (0.060)	3/248	NT	9.0%	coding (308/1116 nt)	PP_5587	hypothetical protein
	?	NC_002947	3538528 =	27 (0.560)					coding (350/1116 nt)	PP_5587	hypothetical protein

TGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTGGAGCCAGGCGGTGACCGAGCGCAGTACCTTGAGCAACGAAAC  >  NC_002947/3538382‑3538663                                                                                                                                                   |                                                                                                                                         tGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTAc                                                                                                                                         <  3:291981/148‑1 (MQ=255)  gACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCCCCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACaa                                                                                                                                       >  5:208489/1‑149 (MQ=255)   cccGTGACGAATTGAGGGTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAAc                                                                                                                                      <  2:246713/148‑1 (MQ=255)   aCCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACaa                                                                                                                                       <  3:89728/148‑1 (MQ=255)     cGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACg                                                                                                                                     >  2:93434/1‑148 (MQ=255)       ctccagttgccagtcaaggtgtaaagcttctgcgtaccgtcggtggtaatcaccccggtatccagtacggtgcccgacagcgtcgagcctttcgttgtAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGaaa                                                                                                                                  >  1:254021‑M1/99‑149 (MQ=255)         tccagttgccagtcaaggtgtaaagcttctgcgtaccgtcggtggtaatcaccccggtatccagtacggtgcccgacagcgtcgagctttcgttgtAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAAc                                                                                                                                      >  5:108064‑M1/97‑143 (MQ=255)         tccagttgccagtcaaggtgtaaagcttctgcgtaccgtcggtggtaatcaccccggtatccagtacggtgcccgacagcgtcgagctttcgttgtAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAAc                                                                                                                                      <  6:108064‑M1/47‑1 (MQ=255)            aaTTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑Gc                                                                                                                               >  4:279858/1‑146 (MQ=255)            aaTTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑Gc                                                                                                                               <  3:279858/146‑1 (MQ=255)             aTTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGa                                                                                                                           <  2:63088/149‑1 (MQ=255)                      ggggCGTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCg                                                                                                                   <  7:258037/148‑1 (MQ=255)                         gCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGaaa                                                                                                                                  >  4:282810/1‑131 (MQ=255)                         gCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGaaa                                                                                                                                  <  3:282810/131‑1 (MQ=255)                            tGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCg                                                                                                            >  8:262475/1‑149 (MQ=255)                               catgcatCTGCTGCGCTCGTCCGATACGGATATCGTCGAAGACCGTGAAGACACTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTAc                                                                                                         >  6:18979/1‑149 (MQ=255)                                atgcatCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACg                                                                                                                         >  6:108473/1‑132 (MQ=255)                                atgcatCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACg                                                                                                                         <  5:108473/132‑1 (MQ=255)                                       tgctgcGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTCGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCAACGTACTGGATAcc                                                                                                 >  7:27139/1‑149 (MQ=255)                                                     gATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTaccac                                                                                   <  7:249370/149‑1 (MQ=255)                                                      aTACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTaccacc                                                                                  >  8:143323/1‑149 (MQ=255)                                                            atatCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGt                                                                                                           <  7:52666/118‑1 (MQ=255)                                                            atatCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGt                                                                                                           >  8:52666/1‑118 (MQ=255)                                                            atatCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGt                                                                            <  1:93434/149‑1 (MQ=255)                                                                cgtcgATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCg                                                                                                                            >  5:9613/1‑97 (MQ=255)                                                                cgtcgATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCg                                                                                                                            <  6:9613/97‑1 (MQ=255)                                                                         ccGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACaa                                                                                                                                       <  4:71198/78‑1 (MQ=255)                                                                         ccGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACaa                                                                                                                                       >  3:71198/1‑78 (MQ=255)                                                                         ccGTGAAGACCCTGATATCAGCATGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCtt                                                                <  6:208489/148‑1 (MQ=255)                                                                                   ccTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGAc                                                     >  1:116599/1‑149 (MQ=255)                                                                                     tGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGCAGCTTTACACCTTGACTg                                                   >  7:79536/1‑149 (MQ=255)                                                                                             gCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTgg                                           <  7:262475/149‑1 (MQ=255)                                                                                                tttcgttgtagcgccccaccaggccaaaccgcccccgctcggtggtgcgctACAACGAAAGGCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTGGAg                                         >  1:254021‑M2/52‑149 (MQ=255)                                                                                                    ttGGCAGCGCACGACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGGTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACTCCTTGACTGGCAACTGGAGCCAgg                                    <  5:18979/149‑1 (MQ=255)                                                                                                    gttgtagcgccccaccaggccaaaccgcccccgctcggtggtgcgctACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTGGa                                          >  5:108064‑M2/48‑143 (MQ=255)                                                                                                    gttgtagcgccccaccaggccaaaccgcccccgctcggtggtgcgctACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTGGa                                          <  6:108064‑M2/96‑1 (MQ=255)                                                                                                                caccGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑AGTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTGGAGCCAGGCGGTGACCGAgc                        >  1:228746/1‑149 (MQ=255)                                                                                                                              ggTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCtt                                                                >  2:8919/1‑95 (MQ=255)                                                                                                                                      cTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTGGAGCCAGGCGGTGACCGAGCGCAGTACCTTGAGCAACGAAac  >  1:183676/1‑149 (MQ=255)                                                                                                                                          tggGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTaccac                                                                                   <  1:297716/64‑1 (MQ=255)                                                                                                                                          tggGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTaccac                                                                                   >  2:297716/1‑64 (MQ=255)                                                                                                                                                   |                                                                                                                                         TGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAA‑GCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTGGAGCCAGGCGGTGACCGAGCGCAGTACCTTGAGCAACGAAAC  >  NC_002947/3538382‑3538663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.