New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3538486 =	35 (0.690)	3 (0.060)	3/248	NT	9.0%	coding (308/1116 nt)	PP_5587	hypothetical protein
	?	NC_002947	3538528 =	27 (0.560)					coding (350/1116 nt)	PP_5587	hypothetical protein

TACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTGGAGCCAGG  >  NC_002947/3538362‑3538629                                                                                                                             |                                                                                                                                                tACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGtt                                                                                                                         >  4:89728/1‑149 (MQ=255)    acCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAgcg                                                                                                                                              <  8:145332/125‑1 (MQ=255)    acCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAgcg                                                                                                                                              >  7:145332/1‑125 (MQ=255)     cccTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGc                                                                                                                     >  8:258037/1‑149 (MQ=255)      ccTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGcc                                                                                                                    <  4:190316/149‑1 (MQ=255)              gCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTgggg                                                                                                            >  4:291981/1‑149 (MQ=255)                     tGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTAc                                                                                                      <  3:291981/148‑1 (MQ=255)                      gACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCCCCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACaa                                                                                                    >  5:208489/1‑149 (MQ=255)                       cccGTGACGAATTGAGGGTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAAc                                                                                                   <  2:246713/148‑1 (MQ=255)                       aCCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACaa                                                                                                    <  3:89728/148‑1 (MQ=255)                         cGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACg                                                                                                  >  2:93434/1‑148 (MQ=255)                           ctccagttgccagtcaaggtgtaaagcttctgcgtaccgtcggtggtaatcaccccggtatccagtacggtgcccgacagcgtcgagcctttcgttgtAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGaaa                                                                                               >  1:254021‑M1/99‑149 (MQ=255)                             tccagttgccagtcaaggtgtaaagcttctgcgtaccgtcggtggtaatcaccccggtatccagtacggtgcccgacagcgtcgagctttcgttgtAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAAc                                                                                                   <  6:108064‑M1/47‑1 (MQ=255)                             tccagttgccagtcaaggtgtaaagcttctgcgtaccgtcggtggtaatcaccccggtatccagtacggtgcccgacagcgtcgagctttcgttgtAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAAc                                                                                                   >  5:108064‑M1/97‑143 (MQ=255)                                aaTTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGc                                                                                             >  4:279858/1‑146 (MQ=255)                                aaTTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGc                                                                                             <  3:279858/146‑1 (MQ=255)                                 aTTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGa                                                                                         <  2:63088/149‑1 (MQ=255)                                          ggggCGTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCg                                                                                 <  7:258037/148‑1 (MQ=255)                                             gCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGaaa                                                                                               >  4:282810/1‑131 (MQ=255)                                             gCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGaaa                                                                                               <  3:282810/131‑1 (MQ=255)                                                tGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCGGGCACCg                                                                          >  8:262475/1‑149 (MQ=255)                                                   catgcatCTGCTGCGCTCGTCCGATACGGATATCGTCGAAGACCGTGAAGACACTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCGGGCACCGTAc                                                                       >  6:18979/1‑149 (MQ=255)                                                    atgcatCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACg                                                                                       <  5:108473/132‑1 (MQ=255)                                                    atgcatCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACg                                                                                       >  6:108473/1‑132 (MQ=255)                                                           tgctgcGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTCGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCGGGCAACGTACTGGATAcc                                                               >  7:27139/1‑149 (MQ=255)                                                                         gATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTaccac                                                 <  7:249370/149‑1 (MQ=255)                                                                          aTACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTaccacc                                                >  8:143323/1‑149 (MQ=255)                                                                                atatCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCGGGCACCGt                                                                         <  7:52666/118‑1 (MQ=255)                                                                                atatCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCGGGCACCGt                                                                         >  8:52666/1‑118 (MQ=255)                                                                                atatCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGt                                          <  1:93434/149‑1 (MQ=255)                                                                                   tcgtcgATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGgcgc                                                                                                         <  8:166701/83‑1 (MQ=255)                                                                                   tcgtcgATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGAAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGgcgc                                                                                                         >  7:166701/1‑83 (MQ=255)                                                                                    cgtcgATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCg                                                                                          <  6:9613/97‑1 (MQ=255)                                                                                    cgtcgATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCg                                                                                          >  5:9613/1‑97 (MQ=255)                                                                                             ccGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACaa                                                                                                    <  4:71198/78‑1 (MQ=255)                                                                                             ccGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACaa                                                                                                    >  3:71198/1‑78 (MQ=255)                                                                                             ccGTGAAGACCCTGATATCAGCATGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCtt                              <  6:208489/148‑1 (MQ=255)                                                                                                       ccTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGAc                   >  1:116599/1‑149 (MQ=255)                                                                                                         tGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGCAGCTTTACACCTTGACTg                 >  7:79536/1‑149 (MQ=255)                                                                                                                 gCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTgg         <  7:262475/149‑1 (MQ=255)                                                                                                                        ttGGCAGCGCACGACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGGTACAACGAAAGCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACTCCTTGACTGGCAACTGGAGCCAgg  <  5:18979/149‑1 (MQ=255)                                                                                                                             |                                                                                                                                                TACACCCTGATCGGCACTTTTGACCGTGACGAATTGAGGTTGGGGCTTGGCATGCATCTGCTGCGCTCGTCCGATACGGATATCGTCGATGACCGTGAAGACCCTGATATCAGCCTGGGTTGGCAGCGCACCACCGAGCGGGGGCGGTTTGGCCTGGTGGGGCGCTACAACGAAAGCTCGACGCTGTCGGGCACCGTACTGGATACCGGGGTGATTACCACCGACGGTACGCAGAAGCTTTACACCTTGACTGGCAACTGGAGCCAGG  >  NC_002947/3538362‑3538629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.