| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3547416 = | 45 (0.890) | 4 (0.080) | 4/246 | NT | 7.6% | coding (361/1377 nt) | PP_3132 | polysaccharide transporter |
| ? | NC_002947 | 3547489 = | 55 (1.150) | coding (434/1377 nt) | PP_3132 | polysaccharide transporter | |||||
AAGTGCGTACCGCCACATCTATCTTGGTGGACTGGAAACCCCAGATGGCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3547533‑3547416‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccaTCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGCTCGTGCTGGGCTTGCTGACCCATTCGATCTGGGCGCTGGT > NC_002947/3547489‑3547636 AAGTGCGTACCGCCACATCTATCTTGGTGGACTGGAAACCCCAGATGGCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCG < 3:137759/114‑1AAGTGCGTACCGCCACATCTATCTTGGTGGACTGGAAACCCCAGATGGCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCG > 4:137759/1‑114 CCCAGATGGCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATTGGT > 1:161821/1‑149 CAGATGGCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGT‑‑‑‑CGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATTGGTCGACCT > 2:167293/1‑149 ATGGCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCGGCCATCTGGGGGTTCCAGTCCCCCAAGATAGATGTGGCGGTACGCACTTTCCAACAAACGCGCGGGGTATTGGTCGACC > 7:229158/1‑149 GCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATTGGTCGACCTTG < 2:161821/149‑1 GGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGCTCGTGCTGGGCTTGCTGACCCATTCGAgatggaa > 5:19359/1‑140 ATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGCTCGTGCTGGGCTTGCTGACCCATTCGATCTGGGCGCTGGT < 2:226940/149‑1 AAGTGCGTACCGCCACATCTATCTTGGTGGACTGGAAACCCCAGATGGCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3547533‑3547416‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccaTCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGCTCGTGCTGGGCTTGCTGACCCATTCGATCTGGGCGCTGGT > NC_002947/3547489‑3547636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |