New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3547416 =	45 (0.890)	4 (0.080)	4/246	NT	7.6%	coding (361/1377 nt)	PP_3132	polysaccharide transporter
	?	NC_002947	3547489 =	55 (1.150)					coding (434/1377 nt)	PP_3132	polysaccharide transporter

GCGCCAGAACATCATCCAGAGCCACCGCGGAGACGATCCGGACTTTCTCAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATT  >  NC_002947/3547268‑3547555                                                                                                                                                     |                                                                                                                                              accagcgcccagatcgaatgggtcagcaagcccagcacgagcatcaccaccaggcccgccacctgcgaggcaaggtcgaccaataccacgcgcttttgttggaaagtgcgtaccgccacatctatcttggtggactggaaaccccagat                                                                                                                                               <  2:226940‑M1/1‑1 (MQ=255)       ttccatctcgaatgggtcagcaagcccagcacgagcatcaccaccaggcccgccacctgcgaggcaaggtcgaccaataccacgcgcttttgttggaaagtgcgtaccgccacatctatcttggtggactggaaaccccagaTggcc                                                                                                                                           >  5:19359‑M1/143‑147 (MQ=255)              atcCAGAGCCACCGCGGAGACGATCCGGACTTTCTCAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTc                                                                                                                                  >  5:200779/1‑149 (MQ=255)               tcCAGAGCCACCGCGGAGACGATCCGGACTTTCTCAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCg                                                                                                                                 <  8:148887/149‑1 (MQ=255)                  agagCCACCGCGGAGACGATCCGGACTTTCTCAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCtgtg                                                                                                                                              <  4:292525/133‑1 (MQ=255)                  agagCCACCGCGGAGACGATCCGGACTTTCTCAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCtgtg                                                                                                                                              >  3:292525/1‑133 (MQ=255)                    cgCCACCGCGGAGACGATCCGGACTTTCTCAACACCGCCTGGACCGTGCTGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCtgt                                                                                                                                               <  8:129558/129‑1 (MQ=255)                    agCCACCGCGGAGACGATCCGGACTTTCTCAACACCGCCTGGACCGTGCTGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCtgt                                                                                                                                               >  7:129558/1‑130 (MQ=255)                    agCCACCGCGGAGACGATCCGGACTTTCTCAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTa                                                                                                                            >  1:157461/1‑149 (MQ=255)                     gCCACCGCGGAGACGATCCGGACTTTCTCAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTAt                                                                                                                           <  2:157461/149‑1 (MQ=255)                      ccACCGCGGAGACGATCCGGACTTTCTCAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATg                                                                                                                          >  7:242978/1‑149 (MQ=255)                                   gATCCGGACTTTCTCAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑t                                                                                                            >  4:154526/1‑149 (MQ=255)                                     tCCGGACTTTCTCAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGc                                                                                                          <  3:126725/149‑1 (MQ=255)                                          aCTTTCTCAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATg                                                                                                    >  5:80222/1‑149 (MQ=255)                                          aCTTTCTCAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATg                                                                                                    <  3:154526/149‑1 (MQ=255)                                                 cAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTgg                                                                                             >  2:96454/1‑149 (MQ=255)                                                 cAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTgg                                                                                             >  3:207705/1‑149 (MQ=255)                                                  aaCACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTgg                                                                                             <  2:191688/148‑1 (MQ=255)                                                  aaCACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGc                                                                                            >  5:103736/1‑149 (MQ=255)                                                   accccGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTGGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCg                                                                                           <  6:200779/146‑1 (MQ=255)                                                     acCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTg                                                                                              <  3:220616/144‑1 (MQ=255)                                                     acCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTg                                                                                              >  4:220616/1‑144 (MQ=255)                                                         ccTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCAcc                                                                                     >  3:126084/1‑149 (MQ=255)                                                             gACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGc                                                                                  <  4:207705/148‑1 (MQ=255)                                                                  tGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCCATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGAcg                                                                            >  3:134392/1‑149 (MQ=255)                                                                       caaggtcgaccaataccacgcgcttttgttggaaagtgcgtaccgccacatctatcttggtggactggaaaccccagaTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCggcggc                                                                       <  2:161821‑M1/71‑1 (MQ=255)                                                                       atcatcCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCggcggc                                                                       >  2:191980/1‑149 (MQ=255)                                                                        tcatcCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGcc                                                                      <  6:80222/149‑1 (MQ=255)                                                                         aggtcgaccaataccacgcgcttttgttggaaagtgcgtaccgccacatctatcttggtggactggaaaccccagaTGGCCG‑‑‑‑ACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTg                                                                 >  2:167293‑M1/77‑149 (MQ=255)                                                                          ggtcgaccaataccccgcgcgtttgttggaaagtgcgtaccgccacatctatcttgggggactggaacccccagaTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCAt                                                                    >  7:229158‑M1/76‑149 (MQ=255)                                                                               accaataccacgcgcttttgttggaaagtgcgtaccgccacatctatcttggtggactggaaaccccagaTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTggg                                                               >  1:161821‑M1/71‑149 (MQ=255)                                                                                       tgctgTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAg                                                       >  5:27150/1‑149 (MQ=255)                                                                                            tttGCCCTTTCCCTGCTGGTGGCCCTGGGTTGTTGGTTGGGCCAACTGGCTGAGCTTTGGCCGGCCGACTCGACCCATGCCGCGCCGGTAC‑TGG‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTcca                                                   <  4:134392/148‑1 (MQ=255)                                                                                            tttGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTcca                                                   <  1:322095/148‑1 (MQ=255)                                                                                                cccTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTccacc                                                 >  6:167459/1‑146 (MQ=255)                                                                                                 ccTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTccacc                                                 >  6:331658/1‑145 (MQ=255)                                                                                                 ccTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAaga                                             <  5:167459/149‑1 (MQ=255)                                                                                                  cTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAaga                                             >  3:262874/1‑148 (MQ=255)                                                                                                       ccTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAagatagat                                        >  7:156863/1‑148 (MQ=255)                                                                                                       ccTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAagatagat                                        <  8:156863/148‑1 (MQ=255)                                                                                                         tgctgctgGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGCCTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCCCCAAGATAGAtgtg                                     >  8:66724/1‑149 (MQ=255)                                                                                                           gtgctgGCCCTGGGTGGTTGGTTGGCCCAAATTGGTGCTCTGTGGGCGGCCGTCTCGACCTATTGCGCGGCGGTTCTTGCGCCTTGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGAtgt                                      <  1:96454/147‑1 (MQ=255)                                                                                                              ctgGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTg                                                                                              <  7:58398/87‑1 (MQ=255)                                                                                                              ctgGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTg                                                                                              >  8:58398/1‑87 (MQ=255)                                                                                                               tgGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTa                               >  1:146921/1‑149 (MQ=255)                                                                                                                ggCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCGGTCCACCAAGATAGATGTGGCGGTAc                              >  4:121529/1‑149 (MQ=255)                                                                                                                   ccTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCa                           <  4:262874/149‑1 (MQ=255)                                                                                                                        gAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTc                      <  5:331658/149‑1 (MQ=255)                                                                                                                           cTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCcaa                   <  7:164759/149‑1 (MQ=255)                                                                                                                             tggttggCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCcaac                  >  5:18947/1‑148 (MQ=255)                                                                                                                                      cAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGt        <  6:103736/149‑1 (MQ=255)                                                                                                                                       aaCTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTg       <  6:43451/149‑1 (MQ=255)                                                                                                                                           ggCTGAGCTGTGGCCGGCCGACTCAACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTAt   >  6:158782/1‑149 (MQ=255)                                                                                                                                            gCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTAtt  >  3:232142/1‑149 (MQ=255)                                                                                                                                            gCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTAt   <  4:126084/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              GCGCCAGAACATCATCCAGAGCCACCGCGGAGACGATCCGGACTTTCTCAACACCGCCTGGACCGTGCAGATCATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTAC‑TGC‑CGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATT  >  NC_002947/3547268‑3547555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.