New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3606080	44 (0.870)	5 (0.100)	5/246	NT	9.4%	coding (682/951 nt)	PP_3181	site‑specific recombinase
	?	NC_002947	= 3606131	54 (1.120)					coding (631/951 nt)	PP_3181	site‑specific recombinase

CAGCGACTTCAGTTCCCAACCATTGGCCGTGGCCCAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3605928‑3606080 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgccGGTATTGCCCATGGGCCGGTGTTCCGCAAACTCGACCGCTGGGGCAACCTTGGCGACAACGCGCTCAACAGCAACAGCCTGGTGGGCCTGCTGCGGCGCATGCTGGAACGCGCCGGGGTGCCGGCGGCGCTGTATACCGGCCACTC  <  NC_002947/3606131‑3605986                                                                                                                                                                                                                                                                                                             CAGCGACTTCAGTTCCCAACCATTGGCCGTGGCCCAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGT                                                                                                                                                        >  4:155883/1‑149   GCGACTTCAGTTCCCAACCATTGGCCGTGGCCCAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCG                                                                                                                                                      >  4:121148/1‑149             TTCCCAACCATTGGCCGTGGCCCAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCGGTATTGC                                                                                                                                            >  1:185054/1‑149                                           GAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCGGTATTGCCCATGGGCCGGTGTTCCGCAAACTCGACCG                                                                                                              >  6:93850/1‑149                                                               GGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGC                                                                                                                                                     >  1:95367/1‑90                                                               GGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGC                                                                                                                                                     <  2:95367/90‑1                                                                GCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCGGTATTGCCCATGGGCCGGTGTTCCGCAAACTCGACCGCTGGGGCAACCTTGGCGACAA                                                                                         <  2:185054/149‑1                                                                 CCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCGGTATTGCCCATGGGCCGGTGTTCCGCAAACTCGACCGCTGGGGCAACCTTGGCGACAAC                                                                                        <  1:161470/149‑1                                                                  CGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCGGTATTGCCCATGGGCCGGTGTTCCGCAAACTCGACCGCTGGGGCAACCTTGGCGACAACG                                                                                       <  5:93850/149‑1                                                                           GCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTC                                                                                                                                                       <  7:63123/76‑1                                                                           GCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTC                                                                                                                                                       >  8:63123/1‑76                                                                                                                                                     TCGCCGGTATTGCCCATGGGCCGGTGTTCCGCAAACTCGACCGCTGGGGCAACCTTGGCGACAACGCGCTCAACAGCAACAGCCTGGTGGGCCTGCTGCGGCGCATGCTGGAACGCGCCGGGGTGCCGGCGGCGCTGTATACCGGCCAC    <  5:113765/149‑1                                                                                                                                                       GCCGGTATTGCCCATGGGCCGGTGTTCCGCAAACTCGACCGCTGGGGCAACCTTGGCGACAACGCGCTCAACAGCAACAGCCTGGTGGGCCTGCTGCGGCGCATGCTGGAACGCGCCGGGGTGCCGGCGGCGCTGTATACCGGCCACTC  >  3:121148/1‑149                                                                                                                                                        CCGGTATTGCCCATGGGCCGGTGTTCCGCAAACTCGACCGCTGGGGCAACCTTGGCGACAACGCGCTCAACAGCAACAGCCTGGTGGGCCTGCTGCGGCGCATGCTG                                           <  7:127888/107‑1                                                                                                                                                        CCGGTATTGCCCATGGGCCGGTGTTCCGCAAACTCGACCGCTGGGGCAACCTTGGCGACAACGCGCTCAACAGCAACAGCCTGGTGGGCCTGCTGCGGCGCATGCTG                                           >  8:127888/1‑107                                                                                                                                                                                                                                                                                                             CAGCGACTTCAGTTCCCAACCATTGGCCGTGGCCCAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3605928‑3606080 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgccGGTATTGCCCATGGGCCGGTGTTCCGCAAACTCGACCGCTGGGGCAACCTTGGCGACAACGCGCTCAACAGCAACAGCCTGGTGGGCCTGCTGCGGCGCATGCTGGAACGCGCCGGGGTGCCGGCGGCGCTGTATACCGGCCACTC  <  NC_002947/3606131‑3605986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.