New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3606080	44 (0.870)	5 (0.100)	5/246	NT	9.4%	coding (682/951 nt)	PP_3181	site‑specific recombinase
	?	NC_002947	= 3606131	54 (1.120)					coding (631/951 nt)	PP_3181	site‑specific recombinase

TTCCCAACCATTGGCCGTGGCCCAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGAGGGCAGGGGTGCGGTGCTGGACGCCCAAGGCTTCGCGGTCGCCCTTG  >  NC_002947/3605940‑3606228                                                                                                                                             |                                                                                                                                                          ttCCCAACCATTGGCCGTGGCCCAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCggtattgc                                                                                                                                                   >  1:185054‑M1/1‑141 (MQ=255) ttCCCAACCATTGGCCGGGGCCCAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGc                                                                                                                                                   <  6:193123/149‑1 (MQ=255)              gCCGTGGCCCAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑Ga                                                                                                                                     <  1:219971/148‑1 (MQ=255)              gCCGTGGCCCAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAg                                                                                                                                    >  6:124080/1‑149 (MQ=255)                 gTGGCCCAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGttt                                                                                                                                 <  2:29814/149‑1 (MQ=255)                  tGGCCCAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTg                                                                                                                                <  3:155883/149‑1 (MQ=255)                    gCCCAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCg                                                                                                                              <  5:124080/149‑1 (MQ=255)                    gCCCAGGGGGCGACTCCACGCCGGAGCGATTGGCCGGTTGACAGCGCCGCCGTCACCCCGGCTCGTTCCTGCATGCGCCGCATCAGTCCCACCAGTCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGc                                                                                                                               <  4:59555/148‑1 (MQ=255)                     cccAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTTGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCgg                                                                                                                             <  2:14846/149‑1 (MQ=255)                     cccAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCg                                                                                                                              >  7:177393/1‑148 (MQ=255)                               gAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCggtattgcccatgggccggtgttccgcaaactcgaccg                                                                                                                     >  6:93850‑M1/1‑111 (MQ=255)                                 aGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCa                                                                                                              >  5:184183/1‑149 (MQ=255)                                   ccACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATg                                                                                                            <  5:191717/149‑1 (MQ=255)                                   ccACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTAGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATg                                                                                                            >  3:194963/1‑149 (MQ=255)                                    cACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGcccc                                                                                                                                                <  6:231652/117‑1 (MQ=255)                                    cACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCACACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGcccc                                                                                                                                                >  5:231652/1‑117 (MQ=255)                                     aCGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATggg                                                                                                          <  6:184183/149‑1 (MQ=255)                                      cGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGc                                                                                                         <  8:177393/149‑1 (MQ=255)                                               gAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCggc                                                                                                >  3:121148‑M2/1‑146 (MQ=255)                                                 gTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCggcga                                                                                              <  5:113765‑M2/149‑6 (MQ=255)                                                    gCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCggtattgcccatgggccggtgttccgcaaactcgaccgctggggcaaccttggcgacaa                                                                                                <  2:185054‑M1/149‑60 (MQ=255)                                                    gCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACtt                                                                                           >  6:266458/1‑149 (MQ=255)                                                    gCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACtt                                                                                           <  6:83121/149‑1 (MQ=255)                                                     ccGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCggtattgcccatgggccggtgttccgcaaactcgaccgctggggcaaccttggcgacaac                                                                                               <  1:161470‑M1/149‑61 (MQ=255)                                                      cGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCggtattgcccatgggccggtgttccgcaaactcgaccgctggggcaaccttggcgacaacg                                                                                              <  5:93850‑M1/149‑62 (MQ=255)                                                        gTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAg                                                                                       <  1:27305/149‑1 (MQ=255)                                                            aCAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGcttt                                                                                   >  6:86687/1‑146 (MQ=255)                                                             cAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCAtt                                                                                  >  7:304446/1‑149 (MQ=255)                                                              aGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGt                                                                                                                                   >  4:234256/1‑102 (MQ=255)                                                              aGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGt                                                                                                                                   <  3:234256/102‑1 (MQ=255)                                                                 gccgccGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑CCACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAg                                                                              >  5:327006/1‑149 (MQ=255)                                                                  ccgccgGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAgg                                                                             >  4:99375/1‑149 (MQ=255)                                                                           ccccGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGAGACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGt                                                                     <  1:84298/149‑1 (MQ=255)                                                                           ccccGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTg                                                                    <  8:304446/149‑1 (MQ=255)                                                                              cGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGc                                                                                                         <  1:244125/109‑1 (MQ=255)                                                                              cGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGc                                                                                                         >  2:244125/1‑109 (MQ=255)                                                                                 cgcgTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAggg                                                              <  6:176176/149‑1 (MQ=255)                                                                                       ccAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAg                                                        >  5:75254/1‑149 (MQ=255)                                                                                        cAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCgg                                                                                                 >  8:127888‑M2/1‑105 (MQ=255)                                                                                        cAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCgg                                                                                                 <  7:127888‑M2/107‑3 (MQ=255)                                                                                          gCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGcc                                                     >  5:82517/1‑149 (MQ=255)                                                                                            aTGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTCGAGAGGAGGCGGA‑ACACCGGCTGCCATGGGCAATACCGGCGACTTCAAGCCATTGCAGTTAGGCAGTGACAGGGCACAAgg                                                       >  1:100208/1‑149 (MQ=255)                                                                                               cgccgcAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGa                                                 <  4:194963/148‑1 (MQ=255)                                                                                               cgccgcAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGa                                                 <  6:24208/148‑1 (MQ=255)                                                                                                            ccaccaGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGAGGGCAg                                           >  6:162322/1‑141 (MQ=255)                                                                                                            ccaccaGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGAGGGCAg                                           <  5:162322/141‑1 (MQ=255)                                                                                                            ccaccaGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGAGGGCAGGggtgcgg                                   <  1:252358/149‑1 (MQ=255)                                                                                                            ccaccaGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTACGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGAGGGCAGGggtgcgg                                   >  6:71685/1‑149 (MQ=255)                                                                                                             caccaGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGAGGGCAGGggtgcggt                                  >  7:138908/1‑149 (MQ=255)                                                                                                               ccaGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGAGGGCAGGggtgcggtgc                                <  6:327006/149‑1 (MQ=255)                                                                                                                    ctgttgctgttgAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGAGGGCAGGGGTGCGGTGCTGGAc                           <  2:100208/149‑1 (MQ=255)                                                                                                                        tgctgttgAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGAGGGCAGGGGTGCGGTGCTGGACGcc                        >  2:255421/1‑148 (MQ=255)                                                                                                                                aGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGAGGGCAGGGGTGCGGTGCTGGACGCCCAAGGCTTc               <  5:266458/149‑1 (MQ=255)                                                                                                                                    cgTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCggcgacaacgcgctcaacagcaacagcctggtgggcctgctgcggcgcatgctggaacgcgccggggtgccggcggcgctgtataccg           <  5:93850‑M2/149‑89 (MQ=255)                                                                                                                                     gTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCggcgacaacgcgctcaacagcaacagcctggtgggcctgctgcggcgcatgctggaacgcgccggggtgccggcggcgctgtataccgg          <  1:161470‑M2/149‑90 (MQ=255)                                                                                                                                      ttGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCggcgacaacgcgctcaacagcaacagcctggtgggcctgctgcggcgcatgctggaacgcgccggggtgccggcggcgctgtataccggc         <  2:185054‑M2/149‑91 (MQ=255)                                                                                                                                         tCGCCggtattgcccatgggccggtgttccgcaaactcgaccgctggggcaaccttggcgacaacgcgctcaacagcaacagcctggtgggcctgctgcggcgcatgctggaacgcgccggggtgccggcggcgctgtataccggccac           <  5:113765‑M1/149‑145 (MQ=255)                                                                                                                                           gCCggtattgcccatgggccggtgttccgcaaactcgaccgctggggcaaccttggcgacaacgcgctcaacagcaacagcctggtgggcctgctgcggcgcatgctggaacgcgccggggtgccggcggcgctgtataccggccactc         >  3:121148‑M1/1‑3 (MQ=255)                                                                                                                                           gCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCt                                                    >  6:99841/1‑101 (MQ=255)                                                                                                                                           gCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCt                                                    <  5:99841/101‑1 (MQ=255)                                                                                                                                            ccggtattgcccatgggccggtgttccgcaaactcgaccgctggggcaaccttggcgacaacgcgctcaacagcaacagcctggtgggcctgctgcggcgcatgctg                                                  <  7:127888‑M1/107‑106 (MQ=255)                                                                                                                                            ccggtattgcccatgggccggtgttccgcaaactcgaccgctggggcaaccttggcgacaacgcgctcaacagcaacagcctggtgggcctgctgcggcgcatgctg                                                  >  8:127888‑M1/1‑2 (MQ=255)                                                                                                                                            ccAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGAGGGCAgg                                          <  3:105059/110‑1 (MQ=255)                                                                                                                                            ccAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGAGGGCAgg                                          >  4:105059/1‑110 (MQ=255)                                                                                                                                             cAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGAGGGCAGGGGTGCGGTGCTGGACGCCCAAGGCTTCGCGGTCGCCCTtg  <  8:138908/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                          TTCCCAACCATTGGCCGTGGCCCAGGTGGCGAAGCCACGCCGTAGCGAGTGGCCGGTATACAGCGCCGCCGGCACCCCGGCGCGTTCCAGCATGCGCCGCAGCAGGCCCACCAGGCTGTTGCTGTTGAGCGCGTTGTCGCCAAGGTTGCCCCAGCGGTC‑‑GAGTTTGCGGA‑ACACCGGC‑‑CCATGGGCAATACCGGCGACTTCAAGCCATTGCAGGTAGGCAGTGACAGGGCACAAGGCCTTGAGGGCAGGGGTGCGGTGCTGGACGCCCAAGGCTTCGCGGTCGCCCTTG  >  NC_002947/3605940‑3606228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.