New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3647622	38 (0.750)	3 (0.060)	3/242	NT	8.5%	intergenic (‑559/‑95)	PP_3213/PP_3214	ABC transporter substrate‑binding protein/hypothetical protein
	?	NC_002947	= 3647672	29 (0.610)					intergenic (‑609/‑45)	PP_3213/PP_3214	ABC transporter substrate‑binding protein/hypothetical protein

GATGATTAGGATTGCTCACAATAAGCAATTTACGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3647471‑3647622 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagggtATGCAGCAGCGGACGACCTCTCCTCTGGCCCCGGCTCATGCCGAGGCGCCACCCTTGCCGG  <  NC_002947/3647672‑3647612                                                                                                                                                                                                                       GATGATTAGGATTGCTCACAATAAGCAATTTACGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAA                                                                   <  4:229629/148‑1                                                     ACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTATGCAGCAGCGGACGACCTCTCCTCTGGCCCCGGCTCATGCCGAGGCGC              <  7:194190/149‑1                                                               CTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTATGCAGCAGCGGACGACCTCTCCTCTGGCCCCGGCTCATGCCGAGGCGCCACCCTTGC     <  7:25627/148‑1                                                                  TGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTATGCAGCAGCGGACGACCTCTCCTCTGGCCCCGGCTCATGCCGAGGCGCCACCCTTGCCGG  <  1:68350/148‑1                                                                                                                                                                                                                       GATGATTAGGATTGCTCACAATAAGCAATTTACGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3647471‑3647622 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagggtATGCAGCAGCGGACGACCTCTCCTCTGGCCCCGGCTCATGCCGAGGCGCCACCCTTGCCGG  <  NC_002947/3647672‑3647612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.