New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3647622	38 (0.750)	3 (0.060)	3/242	NT	8.5%	intergenic (‑559/‑95)	PP_3213/PP_3214	ABC transporter substrate‑binding protein/hypothetical protein
	?	NC_002947	= 3647672	29 (0.610)					intergenic (‑609/‑45)	PP_3213/PP_3214	ABC transporter substrate‑binding protein/hypothetical protein

TCACAATAAGCAATTTACGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCT  >  NC_002947/3647486‑3647765                                                                                                                                         |                                                                                                                                                nnacaATAAGCAATTTACGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCa                                                                                                                                     >  2:116627/3‑149 (MQ=255)   acaATAAGCAATTTACGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCAt                                                                                                                                    >  7:244250/1‑148 (MQ=255)   acaATAAGCAATTTACGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCAt                                                                                                                                    >  3:285067/1‑148 (MQ=255)    caATAAGCAATTTACGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGa                                                                                                                                  <  8:81389/149‑1 (MQ=255)       tAAGCAATTTACGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAACATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGcc                                                                                                                               <  6:202180/149‑1 (MQ=255)         aGCAATTTACGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATg                                                                                                                                   >  1:134528/1‑143 (MQ=255)         aGCAATTTACGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATg                                                                                                                                   <  2:134528/143‑1 (MQ=255)         aGCAATTTACGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCgg                                                                                                                             >  7:143648/1‑149 (MQ=255)         aGCAATTTACGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCgg                                                                                                                             >  7:147862/1‑149 (MQ=255)                 aCGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCagag                                                                                                                     >  6:189966/1‑149 (MQ=255)                                 ttGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCagagga                                                                                                                   <  3:251014/135‑1 (MQ=255)                                 ttGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCagagga                                                                                                                   >  4:251014/1‑135 (MQ=255)                                   ggCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCgctgct                                                                                                   >  3:68934/1‑149 (MQ=255)                                     cACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCtgctgc                                                                                                 <  8:244250/149‑1 (MQ=255)                                      aCGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTatgcagcagcggacgacctctcctctggccccggctcatgccgaggcgc                                                                                                <  7:194190‑M1/149‑50 (MQ=255)                                                cTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTatgcagcagcggacgacctctcctctggccccggctcatgccgaggcgccacccttgc                                                                                       <  7:25627‑M1/148‑59 (MQ=255)                                                   tGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTatgcagcagcggacgacctctcctctggccccggctcatgccgaggcgccacccttgccgg                                                                                    <  1:68350‑M1/148‑62 (MQ=255)                                                     cgcTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTgg                                                                                    <  8:103667/146‑1 (MQ=255)                                                     cgcTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTgg                                                                                    >  7:103667/1‑146 (MQ=255)                                                          aCTCGAGTAGAAGCGGGCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGaaaa                                                                              <  8:159123/147‑1 (MQ=255)                                                            tCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAAc                                                                             >  4:53299/1‑146 (MQ=255)                                                            tCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAAc                                                                             <  3:53299/146‑1 (MQ=255)                                                             cGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGCGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACcaac                                                                         <  1:116627/149‑1 (MQ=255)                                                              gAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACcaa                                                                          <  6:154321/147‑1 (MQ=255)                                                                   gAAGCGGTCAGTGCCCAAAGAGGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCAAGAGGAGCGGTCGTCCGCGGCTGCATACCCTTGCTGGCGCAACCCAACAATCAc                                                                   >  7:293162/1‑149 (MQ=255)                                                                    aaGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCAc                                                                   >  3:99084/1‑148 (MQ=255)                                                                            aGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCtgctgc                                                                                                 <  4:179093/110‑1 (MQ=255)                                                                            aGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCtgctgc                                                                                                 >  3:179093/1‑110 (MQ=255)                                                                                  cAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGc                                                     >  7:249712/1‑148 (MQ=255)                                                                                             tGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGa                                         <  8:143648/149‑1 (MQ=255)                                                                                             tGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGa                                         <  8:147862/149‑1 (MQ=255)                                                                                              gggACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGaa                                        >  1:74607/1‑149 (MQ=255)                                                                                                 aCATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGc                                     >  5:32870/1‑149 (MQ=255)                                                                                                                ccTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGgctgct                      <  4:99084/149‑1 (MQ=255)                                                                                                                    gcgcCGCTCCCCCTGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGTTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTc                    <  8:167459/147‑1 (MQ=255)                                                                                                                      gccgcTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTgg                           >  7:31558/1‑138 (MQ=255)                                                                                                                      gccgcTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTgg                           <  8:31558/138‑1 (MQ=255)                                                                                                                       ccgcTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCt                             <  7:290341/135‑1 (MQ=255)                                                                                                                       ccgcTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCt                             >  8:290341/1‑135 (MQ=255)                                                                                                                               ccGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATacccttgccgggggagcggcgcaaggccgccagagcaatgtcccatgccatctttgggcactgaccgcttctactcgagttagcgca        <  1:68350‑M2/148‑88 (MQ=255)                                                                                                                                cGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCa      <  5:189966/149‑1 (MQ=255)                                                                                                                                  gCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATacccttgccgggggagcggcgcaaggccgccagagcaatgtcccatgccatctttgggcactgaccgcttctactcgagttagcgcaaag     <  7:25627‑M2/148‑91 (MQ=255)                                                                                                                                    aaGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCActct  <  2:74607/149‑1 (MQ=255)                                                                                                                                         |                                                                                                                                                TCACAATAAGCAATTTACGTGTATCCGATTAGTTGGCACGCGCCCTGCTTTGCGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCT  >  NC_002947/3647486‑3647765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.