New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3647622	38 (0.750)	3 (0.060)	3/242	NT	8.5%	intergenic (‑559/‑95)	PP_3213/PP_3214	ABC transporter substrate‑binding protein/hypothetical protein
	?	NC_002947	= 3647672	29 (0.610)					intergenic (‑609/‑45)	PP_3213/PP_3214	ABC transporter substrate‑binding protein/hypothetical protein

CGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCACCGGCAGTGCCCAGGCGAATCCGCTGATGTGGAGC  >  NC_002947/3647538‑3647812                                                                                                                                       |                                                                                                                                             cgcTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTgg                                                                                                                                   <  8:103667/146‑1 (MQ=255) cgcTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTgg                                                                                                                                   >  7:103667/1‑146 (MQ=255)      aCTCGAGTAGAAGCGGGCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGaaaa                                                                                                                             <  8:159123/147‑1 (MQ=255)        tCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAAc                                                                                                                            <  3:53299/146‑1 (MQ=255)        tCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAAc                                                                                                                            >  4:53299/1‑146 (MQ=255)         cGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGCGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACcaac                                                                                                                        <  1:116627/149‑1 (MQ=255)          gAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACcaa                                                                                                                         <  6:154321/147‑1 (MQ=255)               gAAGCGGTCAGTGCCCAAAGAGGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCAAGAGGAGCGGTCGTCCGCGGCTGCATACCCTTGCTGGCGCAACCCAACAATCAc                                                                                                                  >  7:293162/1‑149 (MQ=255)                aaGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCAc                                                                                                                  >  3:99084/1‑148 (MQ=255)                              cAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGc                                                                                                    >  7:249712/1‑148 (MQ=255)                                         tGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGa                                                                                        <  8:143648/149‑1 (MQ=255)                                         tGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGa                                                                                        <  8:147862/149‑1 (MQ=255)                                          gggACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGaa                                                                                       >  1:74607/1‑149 (MQ=255)                                             aCATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGc                                                                                    >  5:32870/1‑149 (MQ=255)                                                            ccTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGgctgct                                                                     <  4:99084/149‑1 (MQ=255)                                                                gcgcCGCTCCCCCTGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGTTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTc                                                                   <  8:167459/147‑1 (MQ=255)                                                                  gccgcTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTgg                                                                          >  7:31558/1‑138 (MQ=255)                                                                  gccgcTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTgg                                                                          <  8:31558/138‑1 (MQ=255)                                                                   ccgcTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCt                                                                            >  8:290341/1‑135 (MQ=255)                                                                   ccgcTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCt                                                                            <  7:290341/135‑1 (MQ=255)                                                                           ccGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATacccttgccgggggagcggcgcaaggccgccagagcaatgtcccatgccatctttgggcactgaccgcttctactcgagttagcgca                                                       <  1:68350‑M2/148‑88 (MQ=255)                                                                            cGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCa                                                     <  5:189966/149‑1 (MQ=255)                                                                              gCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATacccttgccgggggagcggcgcaaggccgccagagcaatgtcccatgccatctttgggcactgaccgcttctactcgagttagcgcaaag                                                    <  7:25627‑M2/148‑91 (MQ=255)                                                                                aaGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCActct                                                 <  2:74607/149‑1 (MQ=255)                                                                                       gcgcCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATacccttgccgggggagcggcgcaaggccgccagagcaatgtcccatgccatctttgggcactgaccgcttctactcgagttagcgcaaagcagggcgcgt                                          <  7:194190‑M2/149‑101 (MQ=255)                                                                                             cGGCATGCGCCGGGGGCAGAGGAGAGGCCGGCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGCCCCAAGGGATGCAAATGACACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCAc                                    <  8:249712/149‑1 (MQ=255)                                                                                                      ccGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCACCGGCAGTGc                           >  7:140722/1‑149 (MQ=255)                                                                                                          ggCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCACCGGCAGTGCCCAg                       <  6:32870/149‑1 (MQ=255)                                                                                                            ccAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCACCGGCAGTGCCCAGGc                     <  8:140722/149‑1 (MQ=255)                                                                                                            ccAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCACCGGCAGTGCCCAGGc                     <  1:131519/149‑1 (MQ=255)                                                                                                                aggagaggTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCACCGGCAGTGCCCAgg                      <  4:33977/144‑1 (MQ=255)                                                                                                                aggagaggTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCACCGGCAGTGCCCAgg                      >  3:33977/1‑144 (MQ=255)                                                                                                                  gagaggTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCACCGGCAGTGCCCAGGCGAATcc               >  7:234792/1‑149 (MQ=255)                                                                                                                    gaggTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCACCGGCAGTGCCCAGGCGAATCCGc             <  4:68934/149‑1 (MQ=255)                                                                                                                                    gcATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCACCGGCAGTGCCCAGGCGAATCCGCTGATGTGGAGc  >  7:168300/1‑144 (MQ=255)                                                                                                                                    gcATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCACCGGCAGTGCCCAGGCGAATCCGCTGATGTGGAGc  <  4:268593/144‑1 (MQ=255)                                                                                                                                    gcATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCACCGGCAGTGCCCAGGCGAATCCGCTGATGTGGAGc  <  8:168300/144‑1 (MQ=255)                                                                                                                                    gcATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCACCGGCAGTGCCCAGGCGAATCCGCTGATGTGGAGc  >  3:268593/1‑144 (MQ=255)                                                                                                                                       |                                                                                                                                             CGCTAACTCGAGTAGAAGCGGTCAGTGCCCAAAGATGGCATGGGACATTGCTCTGGCGGCCTTGCGCCGCTCCCCCGGCAAGGGTGGCGCCTCGGCATGAGCCGGGGCCAGAGGAGAGGTCGTCCGCTGCTGCATACCCTTGCTGGCGAAAACCAACAATCACGACCCAAGGGATGCAAATGAAACCGAACGCTCTTTCCTGGCTGCTTCACAGCGTCGTCCCACTCTGCGCGTTGGCCACCGGCAGTGCCCAGGCGAATCCGCTGATGTGGAGC  >  NC_002947/3647538‑3647812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.