New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3719175	51 (1.010)	3 (0.060)	3/246	NT	5.4%	coding (226/774 nt)	paaF	enoyl‑CoA hydratase/isomerase
	?	NC_002947	= 3719202	56 (1.170)					coding (199/774 nt)	paaF	enoyl‑CoA hydratase/isomerase

GGCGTCGGTACTGGCGATGACGATGTCGGCGCACATTGCCAGTTCGCAACCGCCACCCAGGGCATAGCCGTTGACTGCAGCAATCAGCGGTTTGGCGAATGCGGCGATGCTTTGCCAATGCGCTACGCGCGGGTCATTGAGGATGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3719026‑3719175 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgacATCCGCGAGATGGCCGATCGCGACCTGGTCGGCATCCTCAATGACCCGCGCGTAGCGCATTGGCAAAGCATCGCCGCATTCGCCAAACCGCTGATTGCTGCAGTCAACGGCTATGCCCTGGGTGGCGGTTGCGAACTGGCAATGT  <  NC_002947/3719202‑3719058                                                                                                                                                                                                                                                                                                         GGCGTCGGTACTGGCGATGACGATGTCGGCGCACATTGCCAGTTCGCAACCGCCACCCAGGGCATAGCCGTTGACTGCAGCAATCAGCGGTTTGGCGAATGCGGCGATGCTTTGCCAATGCGCTACGCGCGGGTCATTGAGGATGCCGA                                                                                                                                                    >  2:168109/1‑149                                    gtcCCAGTTCGCACCCGCCACCCAGGGCAGAGCCGTTGACTGCAGCAATCAGCGGGTTGGAGAATGCGGCGACGCGTTGCCAATGCGCTACGCGCGGGTCATTGAGGATGCCGACATCCGCGAGATGGCCGATCGCGACCTGGTCGGCA                                                                                                                 <  8:292100/146‑1                                                                                          GTTTGGCGAATGCGGCGATGCTTTGCCAATGCGCTACGCGCGGGTCATTGAGGATGCCGACATCCGCGAGATGGCCGATCGCGACCTGGTCGGCAT                                                                                                                >  5:315177/1‑96                                                                                          GTTTGGCGAATGCGGCGATGCTTTGCCAATGCGCTACGCGCGGGTCATTGAGGATGCCGACATCCGCGAGATGGCCGATCGCGACCTGGTCGGCAT                                                                                                                <  6:315177/96‑1                                                                                                                                                 GCCGACATCCGCGAGATGGCCGATCGCGACCTGGTCGGCATCCTCAATGACCCGCGCGTAGCGCATTGGCAAAGCATCGCCGCATTCGCCAAACCGCTGATTGCTGCAGTCAACGGCTATGCCCTGGGTGGCGGTTGCGAACTGGCAAT    >  8:163826/1‑149                                                                                                                                                   CGACATCCGCGAGATGGCCGATCGCGACCTGGTCGGCATCCTCAATGACCCGCGCGTAGCGCATTGGCAAAGCATCGCCGCATTCGCCAAACCGCTGATTGCTGCAGTCAACGGCTATGCCCTGGGTGGCGGTTGCGAACTGGCAATGT  >  4:108676/1‑149                                                                                                                                                                                                                                                                                                         GGCGTCGGTACTGGCGATGACGATGTCGGCGCACATTGCCAGTTCGCAACCGCCACCCAGGGCATAGCCGTTGACTGCAGCAATCAGCGGTTTGGCGAATGCGGCGATGCTTTGCCAATGCGCTACGCGCGGGTCATTGAGGATGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3719026‑3719175 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgacATCCGCGAGATGGCCGATCGCGACCTGGTCGGCATCCTCAATGACCCGCGCGTAGCGCATTGGCAAAGCATCGCCGCATTCGCCAAACCGCTGATTGCTGCAGTCAACGGCTATGCCCTGGGTGGCGGTTGCGAACTGGCAATGT  <  NC_002947/3719202‑3719058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.