New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3784144 | 42 (0.830) | 3 (0.060) | 3/240 | NT | 6.9% | coding (468/822 nt) | nikE | nickel ABC transporter ATP‑binding protein |
? | NC_002947 | = 3784171 | 42 (0.900) | coding (495/822 nt) | nikE | nickel ABC transporter ATP‑binding protein |
CAGCATCGGCTGGAGCATCGCCGAGCCGCTGCGCCATCTGACCGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3783994‑3784144 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggccagCGCCCGGGCAATGTTGGCACGCTGCAACTGGCCGCCACTCAACTGCTGCGGCAGGCGTTGGGCATGCTCGGCGCGCAGGCCCATTTCCTCCAGCAGTGCAAGGGTGCGCGCCTGCCGGGCGGCTTCATCCATGTCGGTCAGATG < NC_002947/3784171‑3784028 CAGCATCGGCTGGAGCATCGCCGAGCCGCTGCGCCATCTGACCGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGC > 2:192590/1‑148 ATCTGACCGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGCGCCCGGGCAATGTTGGCACGCTGCAACTGGCC < 5:187465/149‑1 CGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGCGCCCGGGCAATGTTGGCACGCTGCAACTGGCCG < 3:176972/128‑1 CGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGCGCCCGGGCAATGTTGGCACGCTGCAACTGGCCG > 4:176972/1‑128 GCGGCCAGCGCCCGGGCAATGTTGGCACGCTGCAACTGGCCGCCACTCAACTGCTGCGGCAGGCGTTGGGCATGCTCGGCGCGCAGGCCCATTTCCTCCAGCAGTGCAAGGGTGCGCGCCTGCCGGGCGGCTTCATCCATGTCGGT > 4:16509/1‑146 GCCAGCGCCCGGGCAATGTTGGCACGCTGCAACTGGCCGCCACTCAACTGCTGCGGCAGGCGTTGGGCATGCTCGGCGCGCAGGCCCATTTCCTCCAGCAGTGCAAGGGTGCGCGCCTGCCGGGCGGCTTCATCCATGTCGGTCAGATG < 2:22523/149‑1 CAGCATCGGCTGGAGCATCGCCGAGCCGCTGCGCCATCTGACCGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3783994‑3784144 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggccagCGCCCGGGCAATGTTGGCACGCTGCAACTGGCCGCCACTCAACTGCTGCGGCAGGCGTTGGGCATGCTCGGCGCGCAGGCCCATTTCCTCCAGCAGTGCAAGGGTGCGCGCCTGCCGGGCGGCTTCATCCATGTCGGTCAGATG < NC_002947/3784171‑3784028 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |