New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3784144	42 (0.830)	3 (0.060)	3/240	NT	6.9%	coding (468/822 nt)	nikE	nickel ABC transporter ATP‑binding protein
	?	NC_002947	= 3784171	42 (0.900)					coding (495/822 nt)	nikE	nickel ABC transporter ATP‑binding protein

CATCTGACCGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCTTTCGTGCTGATCAGCCATGACCTGAGCCTGG  >  NC_002947/3784028‑3784319                                                                                                                                                |                                                                                                                                                      cATCTGACCGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGctggc                                                                                                                                                  <  2:22523‑M2/149‑6 (MQ=255)       aCCGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGctggccgc                                                                                                                                               >  4:16509‑M2/1‑138 (MQ=255)              tGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCACCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAg                                                                                                                                    <  1:258759/149‑1 (MQ=255)                  tGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGGGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTgg                                                                                                                                <  3:205462/149‑1 (MQ=255)                  tGAAGCCGCCCGGCAGGCGCGCACCCTTGCAATGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGGTGGCCGC‑CTCGCCACAGCTgg                                                                                                                                >  8:201700/1‑149 (MQ=255)                    aaGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTa                                                                                                                              <  1:54523/149‑1 (MQ=255)                        cgccCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGc                                                                                                                          <  5:254880/149‑1 (MQ=255)                            cGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTcga                                                                                                                      >  1:55948/1‑149 (MQ=255)                              gCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTcgacg                                                                                                                    <  5:111188/149‑1 (MQ=255)                              gCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTcgacg                                                                                                                    <  2:55948/149‑1 (MQ=255)                                aGGGGCGCACCCTTGCCCTGCTGGAGGAAATGGGCCTGCGCGCCGATCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCATTTGCAGCGGGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGaa                                                                                                                  <  4:214430/149‑1 (MQ=255)                                aGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTcgacg                                                                                                                    >  7:246490/1‑147 (MQ=255)                                      gcACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTc                                                                                                                                           >  8:153103/1‑118 (MQ=255)                                      gcACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTc                                                                                                                                           <  7:153103/118‑1 (MQ=255)                                          ccTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCAGGTAGTGCTCGACGAAGCGTTGTCg                                                                                                         >  2:249598/1‑148 (MQ=255)                                           cTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCg                                                                                                               <  4:304515/141‑1 (MQ=255)                                           cTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCg                                                                                                               >  3:304515/1‑141 (MQ=255)                                                  tgctgGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGAc                                                                                                >  3:313989/1‑149 (MQ=255)                                                       gaggaAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCt                                                                                           >  8:231780/1‑149 (MQ=255)                                                       gaggaAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACAAAGCGTTGTCGAACCTGGACCGGCt                                                                                           >  5:125174/1‑149 (MQ=255)                                                            aaTGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCACTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTg                                                                                       <  1:249598/149‑1 (MQ=255)                                                             aTGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCa                                                                                     <  4:313989/149‑1 (MQ=255)                                                               gggCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGtt                                                                                        <  8:64962/144‑1 (MQ=255)                                                               gggCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGtt                                                                                        >  7:64962/1‑144 (MQ=255)                                                                     gcgcgcCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTg                                                                                 >  2:90923/1‑145 (MQ=255)                                                                      cgcgcCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCTGCTGCAgga                                                                            <  8:246490/149‑3 (MQ=255)                                                                            gAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTgca                                                                      <  7:231780/149‑1 (MQ=255)                                                                               cATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGGATCTgcagct                                                                   <  1:192590/149‑2 (MQ=255)                                                                                  gCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCCGCAGATCCTGCAGCAGCt                                                                >  5:218855/1‑149 (MQ=255)                                                                                    ccAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTgg                                                              <  1:22523/149‑1 (MQ=255)                                                                                    ccAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTg                                                               >  6:212318/1‑148 (MQ=255)                                                                                           cTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCgg                                                                                             <  5:146462/111‑1 (MQ=255)                                                                                           cTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCgg                                                                                             >  6:146462/1‑111 (MQ=255)                                                                                                  agcagTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGcagcag                                                                  >  8:87531/1‑131 (MQ=255)                                                                                                  agcagTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGcagcag                                                                  <  7:87531/131‑1 (MQ=255)                                                                                                      gTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCcagcg                                              >  1:41645/1‑147 (MQ=255)                                                                                                              gcggcCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCAcc                                    >  8:143750/1‑149 (MQ=255)                                                                                                               cggcCAGTTGCAGCGTGCCAACATTGCCCGGGCGctggccgccactcaactgctgcggcaggcgttgggcatgctcggcgcgcaggcccatttcctccagcagtgcaagggtgcgcgcctgccgggcg                                                         >  4:176972‑M2/1‑34 (MQ=255)                                                                                                               cggcCAGTTGCAGCGTGCCAACATTGCCCGGGCGctggccgccactcaactgctgcggcaggcgttgggcatgctcggcgcgcaggcccatttcctccagcagtgcaagggtgcgcgcctgccgggcg                                                         <  3:176972‑M2/128‑95 (MQ=255)                                                                                                                ggcCAGTTGCAGCGTGCCAACATTGCCCGGGCGctggccgccactcaactgctgcggcaggcgttgggcatgctcggcgcgcaggcccatttcctccagcagtgcaagggtgcgcgcctgccgggcggcttcatccatgtcggtcagat                                   <  5:187465‑M2/149‑117 (MQ=255)                                                                                                                   cAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCttt                               <  2:41645/149‑1 (MQ=255)                                                                                                                        gCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGATGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCt                                 >  3:42864/1‑142 (MQ=255)                                                                                                                        gCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGATGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCt                                 <  4:42864/142‑1 (MQ=255)                                                                                                                         cAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCt                                                                         >  2:122805/1‑101 (MQ=255)                                                                                                                         cAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCt                                                                         <  1:122805/101‑1 (MQ=255)                                                                                                                            cGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCg                                   >  3:119129/1‑136 (MQ=255)                                                                                                                            cGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCg                                   <  4:119129/136‑1 (MQ=255)                                                                                                                                         cccGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCTTTCGTGCTGATCAGCCATGACCt          >  6:179819/1‑148 (MQ=255)                                                                                                                                           cGGGCGCTGGCCGC‑CTCGCAACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATACTGCAGCAGCTGGAAGCCATACGCCAGCGCAGCGGCACCGCTTTCGTGCTGATCAGCCATGACCTGAg       >  6:312989/1‑149 (MQ=255)                                                                                                                                            gggCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCTTTCGTGCTGATCAGCCATGACCTGAGc      >  2:33166/1‑149 (MQ=255)                                                                                                                                                gcTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACAAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCTTTCGTGCTGATCAGCCATGACCTGAGCCTgg  <  6:125174/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                      CATCTGACCGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCTTTCGTGCTGATCAGCCATGACCTGAGCCTGG  >  NC_002947/3784028‑3784319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.