New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3784144	42 (0.830)	3 (0.060)	3/240	NT	6.9%	coding (468/822 nt)	nikE	nickel ABC transporter ATP‑binding protein
	?	NC_002947	= 3784171	42 (0.900)					coding (495/822 nt)	nikE	nickel ABC transporter ATP‑binding protein

CATCGGCTGGAGCATCGCCGAGCCGCTGCGCCATCTGACCGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCTTT  >  NC_002947/3783997‑3784290                                                                                                                                                    |                                                                                                                                                    caTCGGCTGGAGCATCGCCGAGCCGCTGCGCCATCTGACCGACATGGATGAAGCCGCCCGGCAGGTGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGt                                                                                                                                                    >  3:214430/1‑149 (MQ=255)                        cGCTGCGCCATCTGACCGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCgg                                                                                                                             <  2:276488/149‑1 (MQ=255)                                cATCTGACCGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGctggc                                                                                                                     <  2:22523‑M2/149‑6 (MQ=255)                                 aTCTGACCGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGcgcccgggcaatgttggcacgctgcaactggcc                                                                                                                    <  5:187465‑M1/149‑34 (MQ=255)                                      aCCGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGctggccgc                                                                                                                  >  4:16509‑M2/1‑138 (MQ=255)                                        cGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCggg                                                                                                                            >  3:94153/1‑134 (MQ=255)                                        cGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCggg                                                                                                                            <  4:94153/134‑1 (MQ=255)                                             tGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCACCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAg                                                                                                       <  1:258759/149‑1 (MQ=255)                                                aTGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACa                                                                                                                                     <  4:244768/117‑1 (MQ=255)                                                aTGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACa                                                                                                                                     >  3:244768/1‑117 (MQ=255)                                                 tGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGGGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTgg                                                                                                   <  3:205462/149‑1 (MQ=255)                                                 tGAAGCCGCCCGGCAGGCGCGCACCCTTGCAATGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGGTGGCCGC‑CTCGCCACAGCTgg                                                                                                   >  8:201700/1‑149 (MQ=255)                                                   aaGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTa                                                                                                 <  1:54523/149‑1 (MQ=255)                                                       cgccCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGcgcccgggcaatgttggcacgctgcaactggccg                                                                                                                   >  4:176972‑M1/1‑94 (MQ=255)                                                       cgccCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGcgcccgggcaatgttggcacgctgcaactggccg                                                                                                                   <  3:176972‑M1/128‑35 (MQ=255)                                                       cgccCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGc                                                                                             <  5:254880/149‑1 (MQ=255)                                                           cGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTcga                                                                                         >  1:55948/1‑149 (MQ=255)                                                             gCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTcgacg                                                                                       <  5:111188/149‑1 (MQ=255)                                                             gCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTcgacg                                                                                       <  2:55948/149‑1 (MQ=255)                                                               aGGGGCGCACCCTTGCCCTGCTGGAGGAAATGGGCCTGCGCGCCGATCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCATTTGCAGCGGGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGaa                                                                                     <  4:214430/149‑1 (MQ=255)                                                               aGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTcgacg                                                                                       >  7:246490/1‑147 (MQ=255)                                                                     gcACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTc                                                                                                              >  8:153103/1‑118 (MQ=255)                                                                     gcACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTc                                                                                                              <  7:153103/118‑1 (MQ=255)                                                                         ccTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCAGGTAGTGCTCGACGAAGCGTTGTCg                                                                            >  2:249598/1‑148 (MQ=255)                                                                          cTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCg                                                                                  <  4:304515/141‑1 (MQ=255)                                                                          cTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCg                                                                                  >  3:304515/1‑141 (MQ=255)                                                                                 tgctgGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGAc                                                                   >  3:313989/1‑149 (MQ=255)                                                                                      gaggaAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCt                                                              >  8:231780/1‑149 (MQ=255)                                                                                      gaggaAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACAAAGCGTTGTCGAACCTGGACCGGCt                                                              >  5:125174/1‑149 (MQ=255)                                                                                           aaTGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGCACTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTg                                                          <  1:249598/149‑1 (MQ=255)                                                                                            aTGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCa                                                        <  4:313989/149‑1 (MQ=255)                                                                                              gggCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGtt                                                           >  7:64962/1‑144 (MQ=255)                                                                                              gggCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGtt                                                           <  8:64962/144‑1 (MQ=255)                                                                                                    gcgcgcCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTg                                                    >  2:90923/1‑145 (MQ=255)                                                                                                     cgcgcCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCTGCTGCAgga                                               <  8:246490/149‑3 (MQ=255)                                                                                                           gAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTgca                                         <  7:231780/149‑1 (MQ=255)                                                                                                              cATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGGATCTgcagct                                      <  1:192590/149‑2 (MQ=255)                                                                                                                 gCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGc                                                                                                                                 <  5:113164/56‑1 (MQ=255)                                                                                                                 gCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGc                                                                                                                                 >  6:113164/1‑56 (MQ=255)                                                                                                                 gCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCCGCAGATCCTGCAGCAGCt                                   >  5:218855/1‑149 (MQ=255)                                                                                                                   ccAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTgg                                 <  1:22523/149‑1 (MQ=255)                                                                                                                   ccAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTg                                  >  6:212318/1‑148 (MQ=255)                                                                                                                          cTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCgg                                                                >  6:146462/1‑111 (MQ=255)                                                                                                                          cTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCgg                                                                <  5:146462/111‑1 (MQ=255)                                                                                                                                 agcagTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGcagcag                                     <  7:87531/131‑1 (MQ=255)                                                                                                                                 agcagTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGcagcag                                     >  8:87531/1‑131 (MQ=255)                                                                                                                                     gTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCcagcg                 >  1:41645/1‑147 (MQ=255)                                                                                                                                             gcggcCAGcgcccgggcaatgttggcacgctgcaactggccgccactcaactgctgcggcaggcgttgggcatgctcggcgcgcaggcccatttcctccagcagtgcaagggtgcgcgcctgccgggcggcttcatccatgtcggt           >  4:16509‑M1/1‑8 (MQ=255)                                                                                                                                             gcggcCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCAcc       >  8:143750/1‑149 (MQ=255)                                                                                                                                              cggcCAGTTGCAGCGTGCCAACATTGCCCGGGCGctggccgccactcaactgctgcggcaggcgttgggcatgctcggcgcgcaggcccatttcctccagcagtgcaagggtgcgcgcctgccgggcg                            >  4:176972‑M2/1‑34 (MQ=255)                                                                                                                                              cggcCAGTTGCAGCGTGCCAACATTGCCCGGGCGctggccgccactcaactgctgcggcaggcgttgggcatgctcggcgcgcaggcccatttcctccagcagtgcaagggtgcgcgcctgccgggcg                            <  3:176972‑M2/128‑95 (MQ=255)                                                                                                                                               ggcCAGTTGCAGCGTGCCAACATTGCCCGGGCGctggccgccactcaactgctgcggcaggcgttgggcatgctcggcgcgcaggcccatttcctccagcagtgcaagggtgcgcgcctgccgggcggcttcatccatgtcggtcagat      <  5:187465‑M2/149‑117 (MQ=255)                                                                                                                                                gcCAGcgcccgggcaatgttggcacgctgcaactggccgccactcaactgctgcggcaggcgttgggcatgctcggcgcgcaggcccatttcctccagcagtgcaagggtgcgcgcctgccgggcggcttcatccatgtcggtcagatg     <  2:22523‑M1/149‑145 (MQ=255)                                                                                                                                                  cAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCttt  <  2:41645/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CATCGGCTGGAGCATCGCCGAGCCGCTGCGCCATCTGACCGACATGGATGAAGCCGCCCGGCAGGCGCGCACCCTTGCACTGCTGGAGGAAATGGGCCTGCGCGCCGAGCATGCCCAACGCCTGCCGCAGCAGTTGAGTGGCGGCCAGTTGCAGCGTGCCAACATTGCCCGGGCGCTGGCCGC‑CTCGCCACAGCTGGTAGTGCTCGACGAAGCGTTGTCGAACCTGGACCGGCTGTTGCAGCTGCAGATCCTGCAGCAGCTGGAAGCCCTACGCCAGCGCAGCGGCACCGCTTT  >  NC_002947/3783997‑3784290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.