New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3792267	29 (0.580)	3 (0.060)	3/244	NT	8.5%	coding (1051/1755 nt)	PP_3354	acyl‑CoA dehydrogenase
	?	NC_002947	= 3792294	37 (0.780)					coding (1024/1755 nt)	PP_3354	acyl‑CoA dehydrogenase

TCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3792119‑3792267 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacccgGCCATGCGTCGGGTCTTGCTGGAGTTGCGGGTGCGTACCGA  <  NC_002947/3792294‑3792254                                                                                                                                                                                                TCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCG                                           >  2:83104/1‑149                                    CGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGGCCATGCGTCGGGTCTTGCTGGAGTTGCGGGTGCG        <  8:73326/149‑1                                                                     AGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGGCCATGCGTCGGGTCTTGCTGGAGTTGCGGGTGCGTACCGA  <  5:265910/122‑1                                                                     AGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGGCCATGCGTCGGGTCTTGCTGGAGTTGCGGGTGCGTACCGA  >  6:265910/1‑122                                                                                                                                                                                                TCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3792119‑3792267 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacccgGCCATGCGTCGGGTCTTGCTGGAGTTGCGGGTGCGTACCGA  <  NC_002947/3792294‑3792254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.