New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3792267	29 (0.580)	3 (0.060)	3/244	NT	8.5%	coding (1051/1755 nt)	PP_3354	acyl‑CoA dehydrogenase
	?	NC_002947	= 3792294	37 (0.780)					coding (1024/1755 nt)	PP_3354	acyl‑CoA dehydrogenase

GCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATGCCCCAGCCCTTGCAGGCCAACATGCAGACGC  >  NC_002947/3792158‑3792442                                                                                                                                         |                                                                                                                                                     gccAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTg                                                                                                                                          >  4:22572/1‑149 (MQ=255)                  cGCCCGTTGTGCAGGCTCTACGGCGGCGTCGGCGATATGCTGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGcc                                                                                                                           <  3:30859/147‑1 (MQ=255)                     ccGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTggg                                                                                                                      <  1:83104/149‑1 (MQ=255)                           tgCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGcccc                                                                                                                >  4:28965/1‑149 (MQ=255)                              aGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGAGCGCATGACCTCTGTACGCACCCGCAACTCCAGCAAGACGCGACGCATGGCCGGGTGCATGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCt                                                                                                             <  8:85872/149‑1 (MQ=255)                                              tCGGCGATATACAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCCTCCCCTCGGTACGCACCCGCAACTCCAGCAAGACAAGACCCAAGGCCGGGTCAAGGTGGATCGGCTCGGCGCCCTGGGCGCCCCCCTTGgcccgcccagcgg                                                                                              >  8:230738/1‑143 (MQ=255)                                                ggCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCa                                                                                            <  3:22572/148‑1 (MQ=255)                                                       tCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCt                                                                                     <  3:5916/148‑1 (MQ=255)                                                          aGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGgcg                                                                                 >  2:287034/1‑149 (MQ=255)                                                            ccACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGcgcc                                                                               <  3:28965/149‑1 (MQ=255)                                                                   gCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTg                                                                                    >  1:242427/1‑137 (MQ=255)                                                                   gCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTg                                                                                    <  2:242427/137‑1 (MQ=255)                                                                    ccGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAgg                                                                       >  4:51921/1‑149 (MQ=255)                                                                           gTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGt                                                                <  3:51921/149‑1 (MQ=255)                                                                            tAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTc                                                               <  1:287034/149‑1 (MQ=255)                                                                                   gcgcgcgcATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGcc                                                        >  1:234659/1‑149 (MQ=255)                                                                                         gcATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGc                                                  >  7:168158/1‑149 (MQ=255)                                                                                          cATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGc                                                  >  3:153042/1‑148 (MQ=255)                                                                                            tCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAg                                               <  8:168158/149‑1 (MQ=255)                                                                                              cccTCGGTACGCACCCGCAACTCCAGCACGACCCGCCGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAggc                                             <  7:230738/149‑1 (MQ=255)                                                                                               ccTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAggcg                                            >  5:220325/1‑149 (MQ=255)                                                                                                cTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAggcgg                                           >  5:49219/1‑149 (MQ=255)                                                                                                 tCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCcgggtgcgtaccgaggggatgcgcgcgctggcctactggacggcccagtggctggatatcgccgacgccgccgtcgagcct                                                                     >  6:265910‑M2/1‑41 (MQ=255)                                                                                                 tCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCcgggtgcgtaccgaggggatgcgcgcgctggcctactggacggcccagtggctggatatcgccgacgccgccgtcgagcct                                                                     <  5:265910‑M2/122‑82 (MQ=255)                                                                                                    gTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCt                                        >  3:208183/1‑148 (MQ=255)                                                                                                    gTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCt                                        <  4:208183/148‑1 (MQ=255)                                                                                                    gTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTc                                       <  2:234659/149‑1 (MQ=255)                                                                                                       cGCACCCGCAACTCCAGCAAGACCCGACGCATGGCcgggtgcgtaccgaggggatgcgcgcgctggcctactggacggcccagtggctggatatcgccgacgccgccgtcgagcctgcacaacgggcgaaggctgcgacattggcggcg                                    <  8:73326‑M2/149‑115 (MQ=255)                                                                                                          aCCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATg                                 >  1:77813/1‑149 (MQ=255)                                                                                                          aCCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATg                                 >  7:249197/1‑149 (MQ=255)                                                                                                               cAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATGCCCCa                            <  6:49219/149‑1 (MQ=255)                                                                                                                     cAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATGCCCCAGCCCtt                      <  2:77813/149‑1 (MQ=255)                                                                                                                      aGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATGCCCCAGCCCTTg                     <  6:222718/149‑1 (MQ=255)                                                                                                                      aGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATGCCCCAGCCCTTg                     >  3:20714/1‑149 (MQ=255)                                                                                                                         aaGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATGCCCCAGCCCTTGCAg                  <  4:153042/149‑1 (MQ=255)                                                                                                                           gACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATGcccc                             <  6:229483/136‑1 (MQ=255)                                                                                                                           gACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATGCCCCAGCCCTTGCAGGc                <  7:214322/149‑1 (MQ=255)                                                                                                                           gACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATATGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATGcccc                             >  5:229483/1‑136 (MQ=255)                                                                                                                              ccGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATGCCCCAGCCCTTGCAGGCCaa             >  1:128581/1‑149 (MQ=255)                                                                                                                                   gCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATGCCCCAGCCCt                       >  3:161989/1‑134 (MQ=255)                                                                                                                                   gCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATGCCCCAGCCCt                       <  4:161989/134‑1 (MQ=255)                                                                                                                                       ggCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCgg                                                           <  4:275699/94‑1 (MQ=255)                                                                                                                                       ggCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCgg                                                           >  3:275699/1‑94 (MQ=255)                                                                                                                                         ccGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGACCGCCCCGGTGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATGCCCCAGCCCTTGCAGGCCAACATGCAGAcgc  >  2:198988/1‑149 (MQ=255)                                                                                                                                         |                                                                                                                                                     GCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATGCCCCAGCCCTTGCAGGCCAACATGCAGACGC  >  NC_002947/3792158‑3792442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.