New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3792267	29 (0.580)	3 (0.060)	3/244	NT	8.5%	coding (1051/1755 nt)	PP_3354	acyl‑CoA dehydrogenase
	?	NC_002947	= 3792294	37 (0.780)					coding (1024/1755 nt)	PP_3354	acyl‑CoA dehydrogenase

TCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATG  >  NC_002947/3792119‑3792411                                                                                                                                                     |                                                                                                                                                 tCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCG                                                                                                                                                  >  2:83104‑M1/1‑149 (MQ=255)         ggCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCa                                                                                                                                          <  3:92017/149‑1 (MQ=255)                    cGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGc                                                                                                                                                 >  3:136095/1‑131 (MQ=255)                          gggTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATg                                                                                                                         <  7:254890/149‑1 (MQ=255)                                    cgccgcCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGgccatgcgtcgggtcttgctggagttgcgggtgcg                                                                                                               <  8:73326‑M1/149‑36 (MQ=255)                                        gccAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTg                                                                                                           >  4:22572/1‑149 (MQ=255)                                                 gCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGAc                                                                                                                              >  8:261003/1‑121 (MQ=255)                                                 gCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGAc                                                                                                                              <  7:261003/121‑1 (MQ=255)                                                         cGCCCGTTGTGCAGGCTCTACGGCGGCGTCGGCGATATGCTGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGcc                                                                                            <  3:30859/147‑1 (MQ=255)                                                            ccGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTggg                                                                                       <  1:83104/149‑1 (MQ=255)                                                                  tgCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGcccc                                                                                 >  4:28965/1‑149 (MQ=255)                                                                     aGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGgccatgcgtcgggtcttgctggagttgcgggtgcgtaccga                                                                                                         >  6:265910‑M1/1‑81 (MQ=255)                                                                     aGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGgccatgcgtcgggtcttgctggagttgcgggtgcgtaccga                                                                                                         <  5:265910‑M1/122‑42 (MQ=255)                                                                     aGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGAGCGCATGACCTCTGTACGCACCCGCAACTCCAGCAAGACGCGACGCATGGCCGGGTGCATGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCt                                                                              <  8:85872/149‑1 (MQ=255)                                                                                     tCGGCGATATACAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCCTCCCCTCGGTACGCACCCGCAACTCCAGCAAGACAAGACCCAAGGCCGGGTCAAGGTGGATCGGCTCGGCGCCCTGGGCGCCCCCCTTGgcccgcccagcgg                                                               >  8:230738/1‑143 (MQ=255)                                                                                       ggCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCa                                                             <  3:22572/148‑1 (MQ=255)                                                                                              tCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCt                                                      <  3:5916/148‑1 (MQ=255)                                                                                                 aGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGgcg                                                  >  2:287034/1‑149 (MQ=255)                                                                                                   ccACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGcgcc                                                <  3:28965/149‑1 (MQ=255)                                                                                                          gCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTg                                                     >  1:242427/1‑137 (MQ=255)                                                                                                          gCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTg                                                     <  2:242427/137‑1 (MQ=255)                                                                                                           ccGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAgg                                        >  4:51921/1‑149 (MQ=255)                                                                                                                  gTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGt                                 <  3:51921/149‑1 (MQ=255)                                                                                                                   tAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTc                                <  1:287034/149‑1 (MQ=255)                                                                                                                          gcgcgcgcATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGcc                         >  1:234659/1‑149 (MQ=255)                                                                                                                                gcATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGc                   >  7:168158/1‑149 (MQ=255)                                                                                                                                 cATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGc                   >  3:153042/1‑148 (MQ=255)                                                                                                                                   tCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAg                <  8:168158/149‑1 (MQ=255)                                                                                                                                     cccTCGGTACGCACCCGCAACTCCAGCACGACCCGCCGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAggc              <  7:230738/149‑1 (MQ=255)                                                                                                                                      ccTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAggcg             >  5:220325/1‑149 (MQ=255)                                                                                                                                       cTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAggcgg            >  5:49219/1‑149 (MQ=255)                                                                                                                                        tCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCcgggtgcgtaccgaggggatgcgcgcgctggcctactggacggcccagtggctggatatcgccgacgccgccgtcgagcct                                      <  5:265910‑M2/122‑82 (MQ=255)                                                                                                                                        tCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCcgggtgcgtaccgaggggatgcgcgcgctggcctactggacggcccagtggctggatatcgccgacgccgccgtcgagcct                                      >  6:265910‑M2/1‑41 (MQ=255)                                                                                                                                           gTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCt         >  3:208183/1‑148 (MQ=255)                                                                                                                                           gTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCt         <  4:208183/148‑1 (MQ=255)                                                                                                                                           gTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTc        <  2:234659/149‑1 (MQ=255)                                                                                                                                              cGCACCCGCAACTCCAGCAAGACCCGACGCATGGCcgggtgcgtaccgaggggatgcgcgcgctggcctactggacggcccagtggctggatatcgccgacgccgccgtcgagcctgcacaacgggcgaaggctgcgacattggcggcg     <  8:73326‑M2/149‑115 (MQ=255)                                                                                                                                                 aCCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATg  >  7:249197/1‑149 (MQ=255)                                                                                                                                                 aCCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATg  >  1:77813/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 TCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGCCCGCCCCGGGGCACTCATCTGGCGCCGCTCCAGGGCATAGTCGCGGGCCTGTTGCCAGGCGGCCTCAGCATG  >  NC_002947/3792119‑3792411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.