| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3846358 = | 43 (0.850) | 3 (0.060) | 3/246 | NT | 6.3% | coding (339/966 nt) | PP_3395 | LysR family transcriptional regulator |
| ? | NC_002947 | 3846424 = | 48 (1.000) | coding (273/966 nt) | PP_3395 | LysR family transcriptional regulator | |||||
CGCTTTGGCACCGCCTTGCTCAAACGTAGCAAGCGCGGCGTGGAGCCCACCCCGGCGGGGCTTGCACTGCTGCGCCATGCCAGGGAAATGACCCGCGCCATGGAACGCCTGGACAGCGAGCTGAGCGAATACGCCCACGGCGCGCGTGGTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3846510‑3846358‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcatTTCCCTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCT > NC_002947/3846424‑3846571 CGCTTTGGCACCGCCTTGCTCAAACGTAGCAAGCGCGGCGTGGAGCCCACCCCGGCGGGGCTTGCACTGCTGCGCCAAGCCAGGGAAATGACCCGCGCCATGGAACGCCTGGACAGCGAGCTGAGCGAATACGCCCACGGCGCGCGTGG < 4:116264/149‑1 TGGCACCGCCTTGCTCAAACGTAGCAAGCGCGGCGTGGAGCCCACCCCGGCGGGGCTTGCACTGCTGCGCCATGCCAGGGAAATGACCCGCGCCATGGAACGCCTGGACAGCGAGCTGAGCGAATACGCCCACGGCGCGCGTGGTCAT < 5:125751/148‑1 GAAATGACCCGCGCCATGGAACGCCTGGACAGCGAGCTGAGCGAATACGCCCACGGCGCGCGTGGTCATTTCCCTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGC > 7:249238/1‑149 ACCCGCGCCATGGAACGCCTGGACAGCGAGCTGAGCGAATACGCCCACGGCGCGCGTGGTCATTTCCCTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGC > 2:30946/1‑149 CCTGGACAGCGAGCTGAGCGAATACGCCCACGGCGCGCGTGGTCATTTCCCTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAA < 8:249238/149‑1 ATTTCCCTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCC > 6:259367/1‑149 ATTTCCCTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCC > 6:33373/1‑149 TTTCCCTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCT > 3:91748/1‑149 CGCTTTGGCACCGCCTTGCTCAAACGTAGCAAGCGCGGCGTGGAGCCCACCCCGGCGGGGCTTGCACTGCTGCGCCATGCCAGGGAAATGACCCGCGCCATGGAACGCCTGGACAGCGAGCTGAGCGAATACGCCCACGGCGCGCGTGGTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3846510‑3846358‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcatTTCCCTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCT > NC_002947/3846424‑3846571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |