New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3846358 =	43 (0.850)	3 (0.060)	3/246	NT	6.3%	coding (339/966 nt)	PP_3395	LysR family transcriptional regulator
	?	NC_002947	3846424 =	48 (1.000)					coding (273/966 nt)	PP_3395	LysR family transcriptional regulator

CTGCAGTGCCCTCGGCCACACCACGAACGACATCGGCGCTGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCA  >  NC_002947/3846210‑3846505                                                                                                                                                     |                                                                                                                                                     aggcgagcgcgcgttcatggcgccgtccgccgtcagtaaacgtatttcagacattgaggcgcgctttggcaccgccttgctcaaacgtagcaagcgcggcgtggagcccaccccggcggggcttgcactgctgcgccatgccagggaaa                                                                                                                                                      >  3:91748‑M1/149‑149 (MQ=255)  ggcgagcgcgcgttcatggcgccgtccgccgtcagtaaacgtatttcagacattgaggcgcgctttggcaccgccttgctcaaacgtagcaagcgcggcgtggagcccaccccggcggggcttgcactgctgcgccatgccagggaaAt                                                                                                                                                     >  6:33373‑M1/148‑149 (MQ=255)  ggcgagcgcgcgttcatggcgccgtccgccgtcagtaaacgtatttcagacattgaggcgcgctttggcaccgccttgctcaaacgtagcaagcgcggcgtggagcccaccccggcggggcttgcactgctgcgccatgccagggaaAt                                                                                                                                                     >  6:259367‑M1/148‑149 (MQ=255)            tCGGCCACACCACGAACGACATCGGCGCTGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGcaca                                                                                                                                                      >  1:134550/1‑138 (MQ=255)            tCGGCCACACCACGAACGACATCGGCGCTGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGcaca                                                                                                                                                      <  2:134550/138‑1 (MQ=255)             cGGCCACACCACGAACGACATCGGCGCTGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCAcgcgcg                                                                                                                                          >  7:290226/1‑149 (MQ=255)                  acacCACGAACGACATCGGCGCTGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTg                                                                                                                                     >  2:92631/1‑149 (MQ=255)                    accacGAACGACATCGGCGCTGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGACAGAAACTCCATGATCGACGATACATTTGCCAGCACCCGCACATGACCACGCGCGCCGTgg                                                                                                                                    <  1:136267/148‑1 (MQ=255)                    accacGAACGACATCGGCGCTGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGACAGAAACTCCATGATCGACGATACATTAGCCAGCACCCGCACATGACCACGCGCGCCGTgg                                                                                                                                    >  2:136267/1‑148 (MQ=255)                      cacGAACGACATCGGCGCTGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCg                                                                                                                                 >  4:190251/1‑149 (MQ=255)                      cacGAACGACATCGGCGCTGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCg                                                                                                                                 >  3:85318/1‑149 (MQ=255)                        cgaacgaCATCGGCGCTGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCAc                                                                                                                                               >  8:68042/1‑133 (MQ=255)                        cgaacgaCATCGGCGCTGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCAc                                                                                                                                               <  7:68042/133‑1 (MQ=255)                                aTCGGCGCTGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTgg                                                                                                                                    >  1:319513/1‑136 (MQ=255)                                aTCGGCGCTGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTgg                                                                                                                                    <  2:319513/136‑1 (MQ=255)                                        tGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTgg                                                                                                                                    >  6:142704/1‑128 (MQ=255)                                              ttcagacattgaggcgcgctttggcaccgccttgctcaaacgtagcaagcgcggcgtggagcccaccccggcggggcttgcactgctgcgccatgccagggaaATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAgg                                                                                                         <  8:249238‑M1/46‑1 (MQ=255)                                                               gctttggcaccgccttgctcaaacgtagcaagcgcggcgtggagcccaccccggcggggcttgcactgctgcgccatgccagggaaATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGt                                                                                        >  2:30946‑M1/87‑149 (MQ=255)                                                                ggATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGt                                                                                        >  3:20412/1‑148 (MQ=255)                                                                     gcaccgccttgctcaaacgtagcaagcgcggcgtggagcccaccccggcggggcttgcactgctgcgccatgccagggaaATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTc                                                                                  >  7:249238‑M1/81‑149 (MQ=255)                                                                      gTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGc                                                                                                        >  3:126368/1‑126 (MQ=255)                                                                      gTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGc                                                                                                        <  4:126368/126‑1 (MQ=255)                                                                      gTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTcc                                                                                 >  3:151019/1‑149 (MQ=255)                                                                      gTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCACTGTCCAGGCGTTCCATGGCGCGGGTCATTTcc                                                                                 >  6:24825/1‑149 (MQ=255)                                                                             ttCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCAt                                                                         <  8:290226/149‑1 (MQ=255)                                                                              tCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATg                                                                        >  6:10112/1‑149 (MQ=255)                                                                               ccAGCATGAACGCTGACAGTTCTACGGGCAGAAACTCCATGATCGACGATACAATGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTTGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTCGCATgg                                                                       >  6:55076/1‑149 (MQ=255)                                                                                ccgCATGAACGCTGACAGTTCTGCGGGCAGAAACTCCATGATCGACGAGACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGGCCAGGCGTTCCATTGAGCGGGGCAGTTCC‑CTGGCATGgc                                                                      >  3:189935/3‑149 (MQ=255)                                                                                        aCGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGt                                                              <  3:152740/149‑1 (MQ=255)                                                                                                          gCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTg                                            >  4:214112/1‑149 (MQ=255)                                                                                                          gCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTg                                            <  1:59181/149‑1 (MQ=255)                                                                                                          gCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCACTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTg                                            <  5:24825/149‑1 (MQ=255)                                                                                                            aGAAACTCCATGATCGACGATACATTGGCCTGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTcc‑c                                                                               <  4:171033/112‑1 (MQ=255)                                                                                                            aGAAACTCCATGATCGACGATACATTGGCCTGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTcc‑c                                                                               >  3:171033/1‑112 (MQ=255)                                                                                                              aaaCTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCt                                        >  1:134330/1‑149 (MQ=255)                                                                                                                aCTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGCCTcc                                      >  2:311256/1‑149 (MQ=255)                                                                                                                 cTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCa                                     >  6:75591/1‑149 (MQ=255)                                                                                                                   ccATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCAcg                                   >  3:130532/1‑149 (MQ=255)                                                                                                                    cATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCAc                                    <  5:10112/147‑1 (MQ=255)                                                                                                                      tGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCAcgccg                                <  4:20412/149‑1 (MQ=255)                                                                                                                          cgacgaTACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCt                            >  6:158059/1‑149 (MQ=255)                                                                                                                           gacgaTACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCgcag                                                                  <  7:24088/110‑1 (MQ=255)                                                                                                                           gacgaTACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCgcag                                                                  >  8:24088/1‑110 (MQ=255)                                                                                                                                  cATTGGCCAGCACCCGCACATGCCCACGCGCGCCGTGGGGGTATTCGCGCCGCTCGCTGTCCAGGGGTTCCATGGCGGGGGTCATTTCCTCTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTAc                      <  1:92631/148‑1 (MQ=255)                                                                                                                                    ttGGCCAGCACCCGCACATGACCACGCGCGCCGTCGCCGTATTCGCTCAGCTCGCTGTCCAGGCCTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGAGCAAGCCCCGCCGGGCTGGGCTCCACGCCGCGCTTGCTACGttt                  >  8:130454/1‑149 (MQ=255)                                                                                                                                         cAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGc              >  2:21436/1‑148 (MQ=255)                                                                                                                                          aGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTTTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCaa            <  3:190251/149‑1 (MQ=255)                                                                                                                                            cACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAgg          >  7:17904/1‑149 (MQ=255)                                                                                                                                               ccGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCgg       >  5:272659/1‑149 (MQ=255)                                                                                                                                               ccGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCgg       >  7:294188/1‑149 (MQ=255)                                                                                                                                               ccGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCgg       >  8:148797/1‑149 (MQ=255)                                                                                                                                                 gctcaTGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGGTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTg     <  7:130454/146‑1 (MQ=255)                                                                                                                                                     ATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCa  <  5:125751‑M1/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CTGCAGTGCCCTCGGCCACACCACGAACGACATCGGCGCTGAAGCGCTCTTCGATATCGGCCTGGATGAGTGGGTATTCCAGCATGAACGCTGACAGTTCTTCGGGCAGAAACTCCATGATCGACGATACATTGGCCAGCACCCGCACATGACCACGCGCGCCGTGGGCGTATTCGCTCAGCTCGCTGTCCAGGCGTTCCATGGCGCGGGTCATTTCC‑CTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCA  >  NC_002947/3846210‑3846505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.