New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3885659 = | 53 (1.050) | 3 (0.060) | 3/250 | NT | 6.1% | coding (1544/1617 nt) | PP_3429 | two component system response regulator/sensor histidine kinase |
? | NC_002947 | 3885699 = | 41 (0.840) | coding (1584/1617 nt) | PP_3429 | two component system response regulator/sensor histidine kinase |
ACGGCATTGTTGAACAAGCCGTTTTCGCTGGCGCATCTTGCCGATGAGGCGCTACGCCTGCTTGACGTGTAAGGCGCTTCAAGGCTTACCTAGAATGTGTGTCACTCGAGCCTGCAACTGCTGCAACTCGAACGGCTTGCAGATCAGGTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3885810‑3885659 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGCTTGTTCAACAATGCCGTGCCCGGCTGATCGAGCAATTGCGCTTCAATCGACT > NC_002947/3885699‑3885845 ACGGCATTGTTGAACAAGCCGTTTTCGCTGGCGCATCTTGCCGATGAGGCGCTACGCCTGCTTGACGTGTAAGGCGCTTCAAGGCTTACCTAGAATGTGTGTCACTCGAGCCTGCAACTGCTGCAACTCGAACGGCTTGCAGATCAGGT < 3:83717/149‑1 CTCGAGCCTGCAACTGCTGCAACTCGAACGGCTTGCAGATCAGGTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGCTTGTT > 6:161651/1‑148 CCTGCAACTGCTGCAACTCGAACGGCTTGCAGATCAGGTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAA < 3:32050/133‑1 CCTGCAACTGCTGCAACTCGAACGGCTTGCAGATCAGGTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAA > 4:32050/1‑133 TGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGCTTGTTCAACAATGCCGTGCCCGGCTGATCGAGCAATTGCGCTTCAATCGA < 5:161651/149‑1 GCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGCTTGTTCAACAATGCCGTG > 7:223027/1‑116 GCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGCTTGTTCAACAATGCCGTG < 8:223027/116‑1 CAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGCTTGTTCAACAATGCCGTGCCCGGCTGATCGAGCAATTGCGCTTCAATCGACT > 3:272900/1‑149 ACGGCATTGTTGAACAAGCCGTTTTCGCTGGCGCATCTTGCCGATGAGGCGCTACGCCTGCTTGACGTGTAAGGCGCTTCAAGGCTTACCTAGAATGTGTGTCACTCGAGCCTGCAACTGCTGCAACTCGAACGGCTTGCAGATCAGGTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3885810‑3885659 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGCTTGTTCAACAATGCCGTGCCCGGCTGATCGAGCAATTGCGCTTCAATCGACT > NC_002947/3885699‑3885845 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |