New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3885659 =	53 (1.050)	3 (0.060)	3/250	NT	6.1%	coding (1544/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase
	?	NC_002947	3885699 =	41 (0.840)					coding (1584/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase

ACAACTGGCAGAAATTGCCCGCAGCCTGCGCCCACGATTACCGGTGCTGTTCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGTTCAACAATGCCGTGCCCGGCTGATCGAGCAATTGCGCTTCAATCGACT  >  NC_002947/3885552‑3885845                                                                                                                                                     |                                                                                                                                                    aCAACTGGCAGAAATTGCCCGCAGCCTGCGCCCACGATTACCGGTGCTGTTCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAgg                                                                                                                                                    >  5:52442/1‑149 (MQ=255)       ggCAGAAATTGCCCGCAGCCTGCGCCCACGATTACCGGTGCTGTTCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTc                                                                                                                                                 >  6:156002/1‑146 (MQ=255)       ggCAGAAATTGCCCGCAGCCTGCGCCCACGATTACCGGTGCTGTTCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTc                                                                                                                                                 <  5:156002/146‑1 (MQ=255)        gCAGAAATTGCCCGCAGCCTGCGCCCACGATTACCGGTGCTGTTCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGa                                                                                                                                               <  8:127231/147‑1 (MQ=255)         aacaagccgttttcgctggcgcatcttgccgatgaggcgctacgcctgcttgacgtgtaaggcgcttcaaggcttacctagaatgtgtgtcactcgagccTGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAg                                                                                                                                              >  6:161651‑M1/101‑148 (MQ=255)            aaaTTGCCCGCAGCCTGCGCCCACGATTACCGGTGCTGTTCATCACCGGTTACGCGGAAACGGTCCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGa                                                                                                                                           >  1:257737/1‑148 (MQ=255)            aaaTTGCCCGCAGCCTGCGCCCACGATTACCGGTGCTGTTCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGt                                                                                                                                             >  6:141255/1‑145 (MQ=255)            aaaTTGCCCGCAGCCTGCGCCCACGATTACCGGTGCTGTTCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGt                                                                                                                                             <  5:141255/145‑1 (MQ=255)                  ttttcgctggcgcatcttgccgatgaggcgctacgcctgcttgacgtgtaaggcgcttcaaggcttacctagaatgtgtgtcactcgagccTGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAgg                                                                                                                                                    >  4:32050‑M1/92‑133 (MQ=255)                  ttttcgctggcgcatcttgccgatgaggcgctacgcctgcttgacgtgtaaggcgcttcaaggcttacctagaatgtgtgtcactcgagccTGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAgg                                                                                                                                                    <  3:32050‑M1/42‑1 (MQ=255)                              gcCCACGATTACCGGTGCTGTTCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCt                                                                                                                       >  7:103497/1‑149 (MQ=255)                                  aCGATTACCGGTGCTGTTCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTCCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGaa                                                                                                                   <  2:161491/149‑1 (MQ=255)                                          cGGTGCTGTTCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTa                                                                                                           <  8:19425/149‑1 (MQ=255)                                               cTGTTCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTc                                                                                                                                                 >  1:106285/1‑106 (MQ=255)                                               cTGTTCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTc                                                                                                                                                 <  2:106285/106‑1 (MQ=255)                                               cTGTTCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGATCGAGTGACACACATTCTAGTTAAGCCTTGAAGCGCCTTACACGt                                                                                                      <  8:12505/149‑1 (MQ=255)                                                  ttCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCaa                                                                                                   <  2:257737/149‑1 (MQ=255)                                                     atcaCCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGc                                                                                                 <  8:103497/148‑1 (MQ=255)                                                       caCCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGcc                                                                                                              >  2:60049/1‑133 (MQ=255)                                                       caCCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGcc                                                                                                              >  3:312607/1‑133 (MQ=255)                                                       caCCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGcc                                                                                                              <  1:60049/133‑1 (MQ=255)                                                       caCCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGcc                                                                                                              <  4:312607/133‑1 (MQ=255)                                                        aCCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGAcacaca                                                                                                                                     <  8:210847/109‑1 (MQ=255)                                                        aCCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGAcacaca                                                                                                                                     >  7:210847/1‑109 (MQ=255)                                                            gTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAg                                                                                         <  4:283584/149‑1 (MQ=255)                                                             ttACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAgc                                                                                        <  6:52442/149‑1 (MQ=255)                                                                cgcgGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAgcgc                                                                                      <  2:268899/148‑1 (MQ=255)                                                                    gAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAgc                                                                                        >  2:224741/1‑142 (MQ=255)                                                                    gAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATCCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAgc                                                                                        <  1:224741/142‑1 (MQ=255)                                                                          g‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCa                                                                            >  5:41817/1‑148 (MQ=255)                                                                             cATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGacacac                                                                                                                                      <  2:190246/88‑1 (MQ=255)                                                                                   ccGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCtt                                                                                                            >  5:177094/1‑108 (MQ=255)                                                                                   ccGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCtt                                                                                                            <  6:177094/108‑1 (MQ=255)                                                                                    cgcgAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATgcgc                                                                    >  7:30716/1‑147 (MQ=255)                                                                                    cgcgAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACATCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCa                                                                  <  5:127966/149‑1 (MQ=255)                                                                                     gcgAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAg                                                                 <  8:21158/149‑1 (MQ=255)                                                                                      cgAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGc                                                                >  7:211292/1‑149 (MQ=255)                                                                                             ttCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACg                                                         >  2:230465/1‑149 (MQ=255)                                                                                                cTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACggat                                                      >  2:269693/1‑147 (MQ=255)                                                                                                     ctcgagcctgcaactgctgcaactcgaacggcttgcagatcaggtgcaGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGtt                                                 >  6:161651‑M2/49‑148 (MQ=255)                                                                                                     cgcTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGTTc                                                <  1:211781/149‑1 (MQ=255)                                                                                                      gcTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGaaaa                                                           <  8:75658/138‑1 (MQ=255)                                                                                                      gcTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGaaaa                                                           >  7:75658/1‑138 (MQ=255)                                                                                                       cTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGTTcaa                                              <  8:211292/149‑1 (MQ=255)                                                                                                           cctgcaactgctgcaactcgaacggcttgcagatcaggtgcaGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGaaaa                                                           <  3:32050‑M2/91‑1 (MQ=255)                                                                                                           cctgcaactgctgcaactcgaacggcttgcagatcaggtgcaGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGaaaa                                                           >  4:32050‑M2/43‑133 (MQ=255)                                                                                                                ACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGTTCAACAATGCCGt                                     <  3:83717‑M1/149‑1 (MQ=255)                                                                                                                        tGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGACTCATCGGCAAGATgcga                                                                    >  6:123139/1‑110 (MQ=255)                                                                                                                          cAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGCATTGTTGAACAA‑GCCGttttcgc                               <  6:41817/145‑7 (MQ=255)                                                                                                                          cAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGTTCAACAATGCCGTGCCCGGc                              <  4:301161/146‑1 (MQ=255)                                                                                                                                          cagcagTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGTTCAACAATGCCGTGCCCGGCTGATCGAGCAATTGCGCtt           >  8:94602/1‑149 (MQ=255)                                                                                                                                          cagcagTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGTTCAACAATGCCGTGCCCGGCTGATCGAGCAATTGCGCtt           >  8:215957/1‑149 (MQ=255)                                                                                                                                           agcagTTGCAGGCTCGAGTGACACCCATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGTTCAACAATGCCGTGCCCGGCTGATCGAGCAATTGCGCtt           >  6:79303/1‑148 (MQ=255)                                                                                                                                                ttGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACTTCAAGCAGGCGTAGAGCCTCATCGGCAAGATGCTCCAGCGAAAACGGC‑TAGTTCAACAATGCCGTGCCCGGCTGATCGAGCAATTGCGCTTCAATc      >  8:227138/1‑148 (MQ=255)                                                                                                                                                ttGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGTTCAACAATGCCGTGCCCGGCTGATCGAGCAATTGCGCTTCAATc      >  1:124633/1‑148 (MQ=255)                                                                                                                                                 tgcaGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGTTCAACAATGCCGTGCCCGGCTGATCGAGCAATTGCGCTTCAATCGa    <  5:161651‑M2/145‑1 (MQ=255)                                                                                                                                                  gcaGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGTTCAACAATGCCGTg                                    >  7:223027‑M2/4‑116 (MQ=255)                                                                                                                                                  gcaGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGTTCAACAATGCCGTg                                    <  8:223027‑M2/113‑1 (MQ=255)                                                                                                                                                   caGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGTTCAACAATGCCGTGCCCGGCTGATCGAGCAATTGCGCTTCAATCGACt  >  3:272900‑M2/3‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ACAACTGGCAGAAATTGCCCGCAGCCTGCGCCCACGATTACCGGTGCTGTTCATCACCGGTTACGCGGAAACGG‑CCATGGCCCGCGAAGGCTTCCTGGGCGCTGACATGCACCTGATCTGCAAGCCGTTCGAGTTGCAGCAGTTGCAGGCTCGAGTGACACACATTCTAGGTAAGCCTTGAAGCGCCTTACACGTCAAGCAGGCGTAGCGCCTCATCGGCAAGATGCGCCAGCGAAAACGGC‑TTGTTCAACAATGCCGTGCCCGGCTGATCGAGCAATTGCGCTTCAATCGACT  >  NC_002947/3885552‑3885845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.