New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4034415 =	48 (0.950)	3 (0.060)	3/246	NT	6.7%	coding (289/1320 nt)	PP_3556	membrane protein
	?	NC_002947	4034456 =	38 (0.790)					coding (248/1320 nt)	PP_3556	membrane protein

CTTCAACGGTGGCCTCGGTGGTGGTGCCACGGTGGCTTTGTCCTATGCACTGCTGGGTGCCTTTGCCGTGGCAATCGCCAAGTCTGGCCTGGCCCATGCACTGGCCGACCGCGCCCTGGGCATGATCGACCGGCGGGGCGACGCCAAGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4034566‑4034415 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agggcgCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTT  >  NC_002947/4034456‑4034562                                                                                                                                                                                                                                                                     CTTCAACGGTGGCCTCGGTGGTGGTGCCACGGTGGCTTTGTCCTATGCACTGCTGGGTGCCTTTGCCGTGGCAATCGCCAAGTCTGGCCTGGCCCATGCACTGGCCGACCGCGCCCTGGGCATGATCGACCGGCGGGGCGACGCCAAGG                                                                                                                >  5:309460/1‑149     AACGGTGGCCTCGGTGGTGGTGCCACGGTGGCTTTGTCCTATGCACTGCTGGGTGCCTTTGCCGTGGCAATCGCCAAGTCTGGCCTGGCCCATGCACTGGCCGACCGCGCCCTGGGCATGATCGACCGGCGGGGCGACGCCAAGGGCG                                                                                                             <  3:194449/148‑1                                                                                               CATGCACTGGCCGACCGCGCCCTGGGCATGATCGACCGGCGGGGCGACGCCAAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCAC                  >  5:71841/1‑149                                                                                                            ACCGCGCCCTGGGCATGATCGACCGGCGGGGCGACGCCAAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACC     >  2:104649/1‑149                                                                                                               GCGCCCTGGGCATGATCGACCGGCGGGGCGACGCCAAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTT  <  6:71841/149‑1                                                                                                                                                                                                                                                                     CTTCAACGGTGGCCTCGGTGGTGGTGCCACGGTGGCTTTGTCCTATGCACTGCTGGGTGCCTTTGCCGTGGCAATCGCCAAGTCTGGCCTGGCCCATGCACTGGCCGACCGCGCCCTGGGCATGATCGACCGGCGGGGCGACGCCAAGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4034566‑4034415 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agggcgCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTT  >  NC_002947/4034456‑4034562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.