New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4034415 =	48 (0.950)	3 (0.060)	3/246	NT	6.7%	coding (289/1320 nt)	PP_3556	membrane protein
	?	NC_002947	4034456 =	38 (0.790)					coding (248/1320 nt)	PP_3556	membrane protein

AAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGC  >  NC_002947/4034308‑4034597                                                                                                                                                      |                                                                                                                                              aacggtggcctcggtggtggtgccacggtggctttgtcctatgcactgctgggtgcctttgccgtggcaatcgccaagtctggcctggcccatgcactggccgaccgC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGgcgc                                                                                                                                               <  6:71841‑M1/42‑1 (MQ=255) aaGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGgcgc                                                                                                                                               >  7:92908/1‑149 (MQ=255)    ggtggcctcggtggtggtgccacggtggctttgtcctatgcactgctgggtgcctttgccgtggcaatcgccaagtctggcctggcccatgcactggccgaccgC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGt                                                                                                                                            >  2:104649‑M1/105‑149 (MQ=255)      ggggTACCATCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCCGGCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTc                                                                                                                                           <  1:67381/149‑1 (MQ=255)        ggTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGTGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGc                                                                                                                                        <  2:184026/149‑1 (MQ=255)             cagcagCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGt                                                                                                                                    <  4:192073/148‑1 (MQ=255)             cagcagCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGt                                                                                                                                    >  3:192073/1‑148 (MQ=255)                cagcGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCAt                                                                                                                                <  5:102750/149‑1 (MQ=255)                 gtggtgccacggtggctttgtcctatgcactgctgggtgcctttgccgtggcaatcgccaagtctggcctggcccatgcactggccgaccgC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATg                                                                                                                               >  5:71841‑M1/92‑149 (MQ=255)                 agcGGGATGAACCCAATGTGTATGGTCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGTTCGATCATGCCCAGGGCGCGGACGGCCAGTGCATg                                                                                                                               <  2:285049/149‑1 (MQ=255)                  gcGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATgg                                                                                                                              <  4:235580/149‑1 (MQ=255)                             gCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGa                                                                                                                   >  2:172762/1‑149 (MQ=255)                              cAATGTGGATGGGCAGGATGTGCTGGGACGACACGGCCACAGCCTTCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCGGGTCGATCATTCCCTGGGCGCGGTCGGCCAGTTCATGGGCCAGGCCAGAc                                                                                                                  <  8:234680/149‑1 (MQ=255)                                aTGTGGATGGGCAGGCTGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACtt                                                                                                                <  6:127358/149‑1 (MQ=255)                                   tgGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCACGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGc                                                                                                             >  6:146491/1‑149 (MQ=255)                                     gATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGa                                                                                                           >  3:270636/1‑149 (MQ=255)                                     gATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGa                                                                                                           <  8:92908/149‑1 (MQ=255)                                       tGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGAtt                                                                                                         <  5:142095/149‑1 (MQ=255)                                                tGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCa                                                                                                <  3:207315/149‑1 (MQ=255)                                                    cTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAg                                                                                             <  1:172762/148‑1 (MQ=255)                                                       ggACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGggccaggcca                                                                                                                     <  4:152854/121‑1 (MQ=255)                                                       ggACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGggccaggcca                                                                                                                     >  3:152854/1‑121 (MQ=255)                                                           gacACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCcag                                                                                     <  4:270636/149‑1 (MQ=255)                                                           gacACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCcag                                                                                     >  2:147080/1‑149 (MQ=255)                                                            acacGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCcag                                                                                     >  1:293938/1‑148 (MQ=255)                                                                     ccGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGc                                                                                           <  5:223503/133‑1 (MQ=255)                                                                     ccGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGc                                                                                           >  6:223503/1‑133 (MQ=255)                                                                       gCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGa                                                                         <  6:171846/149‑1 (MQ=255)                                                                               cAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCTGTGCATAGGACAAAGcga                                                                 >  8:176563/1‑147 (MQ=255)                                                                                      atcatcAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGc                                                          <  4:223342/149‑1 (MQ=255)                                                                                          tcaGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATgg                                                                                                                              >  5:68844/1‑77 (MQ=255)                                                                                          tcaGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATgg                                                                                                                              <  6:68844/77‑1 (MQ=255)                                                                                            catgcactggccgaccgcgccctgggcatgatcgaccggcggggcgacgccaagggcgCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGcaccac                                                     >  5:71841‑M2/59‑149 (MQ=255)                                                                                                     aCCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGAtt                                                                                                         <  7:109513/87‑1 (MQ=255)                                                                                                     aCCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGc                                            >  6:331685/1‑148 (MQ=255)                                                                                                     aCCTTGCC‑GCCCTTGGCGTCGCCCCGCAGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGAtt                                                                                                         >  8:109513/1‑87 (MQ=255)                                                                                                       cTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCAc                                         >  5:103887/1‑149 (MQ=255)                                                                                                       cTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCAc                                         >  6:309460/1‑149 (MQ=255)                                                                                                         accgcgccctgggcatgatcgaccggcggggcgacgccaagggcgCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCAcc                                        >  2:104649‑M2/46‑149 (MQ=255)                                                                                                           cc‑gccCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGggccagg                                                                                                                        <  7:302672/66‑1 (MQ=255)                                                                                                           cc‑gccCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGggccagg                                                                                                                        >  8:302672/1‑66 (MQ=255)                                                                                                            gcgccctgggcatgatcgaccggcggggcgacgccaagggcgCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGtt                                     <  6:71841‑M2/107‑1 (MQ=255)                                                                                                            C‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGtt                                     <  3:194449‑M1/148‑1 (MQ=255)                                                                                                                CCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAg                                 >  5:309460‑M1/1‑149 (MQ=255)                                                                                                                            cccGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTg                           <  3:315388/143‑1 (MQ=255)                                                                                                                            cccGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGATGAAGGCCTTg                           >  4:315388/1‑143 (MQ=255)                                                                                                                                ccgGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCtt                 <  2:293938/149‑1 (MQ=255)                                                                                                                                  ggTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTTGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCg               <  5:146491/149‑1 (MQ=255)                                                                                                                                            gCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGgc     >  4:146684/1‑149 (MQ=255)                                                                                                                                               cAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGACGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATCCCccgcccgc  >  5:110525/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                              AAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGC  >  NC_002947/4034308‑4034597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.