New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4034415 =	48 (0.950)	3 (0.060)	3/246	NT	6.7%	coding (289/1320 nt)	PP_3556	membrane protein
	?	NC_002947	4034456 =	38 (0.790)					coding (248/1320 nt)	PP_3556	membrane protein

GGCGGTCGATACGCAGGCGCGTCAGCACGTACAAAAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTT  >  NC_002947/4034274‑4034562                                                                                                                                              |                                                                                                                                                     ggcggTCGATACGCAGGCGCGTCAGCACGTACAAAAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTg                                                                                                                                              <  2:181250/149‑1 (MQ=255)        gATACGCAGGCGCGTCAGCACGTACAAAAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCATGGCGACGc                                                                                                                                       >  7:234680/1‑149 (MQ=255)         aTACGCAGGCGCGTCAGCACGTACAAAAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGcc                                                                                                                                      >  5:171846/1‑149 (MQ=255)         aTACGCAGGCGCGTCAGCACGTACAAAAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGcc                                                                                                                                      >  2:67381/1‑149 (MQ=255)            cGCAGGCGCGTCAGCACGTACAAAAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGcccc                                                                                                                                    <  3:147515/148‑1 (MQ=255)             gCAGGCGCGTCAGCACGTACAAAAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCccgc                                                                                                                                  >  5:145080/1‑149 (MQ=255)                 gcgcGTCAGCACGTACAAAAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGt                                                                                                                              <  8:92293/149‑1 (MQ=255)                     gTCAGCACGTACAAAAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGAt                                                                                                                          <  6:145080/149‑1 (MQ=255)                      tctgCACGTACAAAAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATc                                                                                                                         <  7:299245/146‑1 (MQ=255)                              tACAAAAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAg                                                                                                                 >  3:223342/1‑149 (MQ=255)                                cAAAAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAggg                                                                                                               <  2:287502/149‑1 (MQ=255)                                 aaaaGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGa                                                                                                                           <  5:61856/136‑1 (MQ=255)                                 aaaaGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGa                                                                                                                           >  6:61856/1‑136 (MQ=255)                                  aaaGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGgcg                                                                                                             >  4:207315/1‑149 (MQ=255)                                   aacggtggcctcggtggtggtgccacggtggctttgtcctatgcactgctgggtgcctttgccgtggcaatcgccaagtctggcctggcccatgcactggccgaccgC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGgcgc                                                                                                            <  6:71841‑M1/42‑1 (MQ=255)                                   aaGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGgcgc                                                                                                            >  7:92908/1‑149 (MQ=255)                                      ggtggcctcggtggtggtgccacggtggctttgtcctatgcactgctgggtgcctttgccgtggcaatcgccaagtctggcctggcccatgcactggccgaccgC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGt                                                                                                         >  2:104649‑M1/105‑149 (MQ=255)                                        ggggTACCATCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCCGGCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTc                                                                                                        <  1:67381/149‑1 (MQ=255)                                          ggTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGTGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGc                                                                                                     <  2:184026/149‑1 (MQ=255)                                               cagcagCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGt                                                                                                 >  3:192073/1‑148 (MQ=255)                                               cagcagCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGt                                                                                                 <  4:192073/148‑1 (MQ=255)                                                  cagcGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCAt                                                                                             <  5:102750/149‑1 (MQ=255)                                                   gtggtgccacggtggctttgtcctatgcactgctgggtgcctttgccgtggcaatcgccaagtctggcctggcccatgcactggccgaccgC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATg                                                                                            >  5:71841‑M1/92‑149 (MQ=255)                                                   agcGGGATGAACCCAATGTGTATGGTCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGTTCGATCATGCCCAGGGCGCGGACGGCCAGTGCATg                                                                                            <  2:285049/149‑1 (MQ=255)                                                    gcGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATgg                                                                                           <  4:235580/149‑1 (MQ=255)                                                               gCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGa                                                                                >  2:172762/1‑149 (MQ=255)                                                                cAATGTGGATGGGCAGGATGTGCTGGGACGACACGGCCACAGCCTTCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCGGGTCGATCATTCCCTGGGCGCGGTCGGCCAGTTCATGGGCCAGGCCAGAc                                                                               <  8:234680/149‑1 (MQ=255)                                                                 aaTGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAgg                                                                                                                >  6:331152/1‑115 (MQ=255)                                                                 aaTGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAgg                                                                                                                <  5:331152/115‑1 (MQ=255)                                                                  aTGTGGATGGGCAGGCTGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACtt                                                                             <  6:127358/149‑1 (MQ=255)                                                                     tgGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCACGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGc                                                                          >  6:146491/1‑149 (MQ=255)                                                                       gATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGa                                                                        <  8:92908/149‑1 (MQ=255)                                                                       gATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGa                                                                        >  3:270636/1‑149 (MQ=255)                                                                         tGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGAtt                                                                      <  5:142095/149‑1 (MQ=255)                                                                                  tGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCa                                                             <  3:207315/149‑1 (MQ=255)                                                                                      cTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAg                                                          <  1:172762/148‑1 (MQ=255)                                                                                         ggACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGggccaggcca                                                                                  >  3:152854/1‑121 (MQ=255)                                                                                         ggACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGggccaggcca                                                                                  <  4:152854/121‑1 (MQ=255)                                                                                             gacACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCcag                                                  <  4:270636/149‑1 (MQ=255)                                                                                             gacACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCcag                                                  >  2:147080/1‑149 (MQ=255)                                                                                              acacGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCcag                                                  >  1:293938/1‑148 (MQ=255)                                                                                                       ccGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGc                                                        >  6:223503/1‑133 (MQ=255)                                                                                                       ccGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGc                                                        <  5:223503/133‑1 (MQ=255)                                                                                                         gCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGa                                      <  6:171846/149‑1 (MQ=255)                                                                                                                 cAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCTGTGCATAGGACAAAGcga                              >  8:176563/1‑147 (MQ=255)                                                                                                                        atcatcAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGc                       <  4:223342/149‑1 (MQ=255)                                                                                                                            tcaGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATgg                                                                                           <  6:68844/77‑1 (MQ=255)                                                                                                                            tcaGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATgg                                                                                           >  5:68844/1‑77 (MQ=255)                                                                                                                                       aCCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGAtt                                                                      <  7:109513/87‑1 (MQ=255)                                                                                                                                       aCCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGc         >  6:331685/1‑148 (MQ=255)                                                                                                                                       aCCTTGCC‑GCCCTTGGCGTCGCCCCGCAGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGAtt                                                                      >  8:109513/1‑87 (MQ=255)                                                                                                                                         cTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCAc      >  5:103887/1‑149 (MQ=255)                                                                                                                                         cTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCAc      >  6:309460/1‑149 (MQ=255)                                                                                                                                             cc‑gccCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGggccagg                                                                                     <  7:302672/66‑1 (MQ=255)                                                                                                                                             cc‑gccCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGggccagg                                                                                     >  8:302672/1‑66 (MQ=255)                                                                                                                                              C‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGtt  <  3:194449‑M1/148‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                     GGCGGTCGATACGCAGGCGCGTCAGCACGTACAAAAGAGGGGGTACCAGCAGCGGGATGAACGCAATGTGGATGGGCAGGATGTTCTGGGACGACACGGCCACCGCCAGCATCAGGCCGATCATCAGCCATTTGACCTTGCC‑GCCCTTGGCGTCGCCCCGCCGGTCGATCATGCCCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTT  >  NC_002947/4034274‑4034562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.