New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4035542	46 (0.910)	5 (0.110)	5/242	NT	9.9%	coding (593/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 4035554	48 (1.020)					coding (605/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer

GGCAGCAACGAAACCGGGCGCTTTGCCCTGTACTGGTCGCAGCCACGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4035391‑4035542 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacgcacACCTTGCCGGAGGTGCGTGGGCATACCCACCAGGTGTTGGCCGGCTGGCCGCTGGGGCCGATCTCGGTGTTGGCCATGTCATGTTCGGGCAGGGCCATCGAGGTCAACTGGCCGGCGCGTGGCTGCGACCAGTACAGGGCA  <  NC_002947/4035554‑4035414                                                                                                                                                                                                                                                                                                       GGCAGCAACGAAACCGGGCGCTTTGCCCTGTACTGGTCGCAGCCACGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACG                                                                                                                                                  >  4:315871/1‑149   CAGCAACGAAACCGGGCGCTTTGCCCTGTACTGGTCGCAGCCACGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCTGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGCATACCCACcag                                                                                                                                                <  1:229157/149‑4                        TGCCCTGTACTGGTCGCAGCCACGCGCCGGCCAGTTGACCTCGATGTCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGCACACCTTGCCGGAGGTGCGTG                                                                                                                            <  2:256359/148‑1                                         AGCCACGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCAGGTGGGTATTACCCCGCACACCGTTCCGGAGGTGCGTGGGCATACCCACCACGTGT                                                                                                          >  6:80982/1‑149                                                                       CCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGCACACCTTGCCGGAGGTGCGTGGG                                                                                                                          <  1:70326/103‑1                                                                       CCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGCACACCTTGCCGGAGGTGCGTGGG                                                                                                                          >  2:70326/1‑103                                                                                                                         CCGGCCAACACCTGGTGGGTATGCCCACGCACCTCCGGCAAGGTGTGCGTGGGCATACCCACCAGGTGTTGGCCGGCTGGCCGCTGGGGCCGATCTCGGTGTTGGCCAGGTCATGTTCGGGCAGGGCCATCGAGGTCAACTGGCCGGCG                          >  5:80982/1‑149                                                                                                                                                  CACGCACACCTTGCCGGAGGTGCGTGGGCATACCCACCAGGTGTTGGCCGGCTGGCCGCTGGGGCCGATCTCGGTGTTGGCCATGTCATGTTCGGGCAGGGCCATCGAGGTCAACTGGCCTGCGCGTGGCTGCGACCAGTACAGGGCA  >  3:194305/1‑148                                                                                                                                                   ACGCACACCTTGCCGGAGGTGCGTGGGCATACCCACCAGGTGTTGGCCGGCTGGCCGCTGGGGCCGATCTCGGTGTTGGCCATGTCATGTTCGGGCAGGGCCATCGAGGTCAACTGGCCGGCGCGTGGCTGCGACCAGTACAGGGCA  >  3:315871/1‑147                                                                                                                                                                                                                                                                                                       GGCAGCAACGAAACCGGGCGCTTTGCCCTGTACTGGTCGCAGCCACGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4035391‑4035542 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacgcacACCTTGCCGGAGGTGCGTGGGCATACCCACCAGGTGTTGGCCGGCTGGCCGCTGGGGCCGATCTCGGTGTTGGCCATGTCATGTTCGGGCAGGGCCATCGAGGTCAACTGGCCGGCGCGTGGCTGCGACCAGTACAGGGCA  <  NC_002947/4035554‑4035414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.