New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4035542	46 (0.910)	5 (0.110)	5/242	NT	9.9%	coding (593/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 4035554	48 (1.020)					coding (605/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer

TGCCCTGTACTGGTCGCAGCCACGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATCAACCTCAATAGCCTGCAGGCACTGAGCCAGGAG  >  NC_002947/4035414‑4035702                                                                                                                                              |                                                                                                                                                     tGCCCTGTACTGGTCGCAGCCACGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTgtgcgt                                                                                                                                                >  3:315871‑M2/1‑141 (MQ=255) tGCCCTGTACTGGTCGCAGCCACGCGCAGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTgtgcgtg                                                                                                                                               >  3:194305‑M2/1‑141 (MQ=255)        tACTGGTCGCAGCCACGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGc                                                                                                                                        <  7:34097/148‑1 (MQ=255)                      aCGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGCTACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTAc                                                                                                                                   <  1:206387/140‑1 (MQ=255)                      aCGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTAc                                                                                                                                   >  8:82579/1‑139 (MQ=255)                      aCGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTAc                                                                                                                                   <  7:82579/139‑1 (MQ=255)                      aCGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTAc                                                                                                                                   >  2:206387/1‑139 (MQ=255)                      aCGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACa                                                                                                                         <  1:125342/149‑1 (MQ=255)                      aCGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACa                                                                                                                         >  3:217984/1‑149 (MQ=255)                         cgcCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACCTGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACACCTTGCCGGAGgtgcgtgggcatacccaccaggtgttggccgg                                                                                                                      >  5:80982‑M2/1‑117 (MQ=255)                            cGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATg                                                                                                                   <  7:160299/149‑1 (MQ=255)                            cGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATg                                                                                                                   >  7:67095/1‑149 (MQ=255)                              gCCAGTTGACCTCGATGGCACTGCCCGAACATGTCATGGCCAACACCTAGATCGGCCCCAGCGGGCAGCCGGCCAACACCTGGTGGGTATGCCAACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGc                                                                                                                 <  8:282713/149‑1 (MQ=255)                                      aCCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGAt                                                                                                                    >  3:240762/1‑138 (MQ=255)                                      aCCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGAt                                                                                                                    <  4:240762/138‑1 (MQ=255)                                           gATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCtg                                                                                                     <  7:168175/148‑1 (MQ=255)                                           gATGGCCCTGCCCGAACAAGACATGGCCAACACCGAGATCCGCCCCAGCGGCCAGCCGGCAAACACCTGGTGGTTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCtg                                                                                                     <  4:56220/148‑1 (MQ=255)                                              ggCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCtgatg                                                                                                  <  8:67095/148‑1 (MQ=255)                                                     cccGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCAt                                                                                          >  7:131397/1‑149 (MQ=255)                                                            atgacatgGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTc                                                                                   >  4:26787/1‑149 (MQ=255)                                                                 atgGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACtt                                                                                                                                 >  8:59356/1‑98 (MQ=255)                                                                 atgGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACtt                                                                                                                                 <  7:59356/98‑1 (MQ=255)                                                                    gCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGc                                                                           <  3:26787/149‑1 (MQ=255)                                                                     ccAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCg                                                                          <  4:6020/149‑1 (MQ=255)                                                                         cacCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTc                                                                       >  3:264584/1‑148 (MQ=255)                                                                          acCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCTTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCTTGTTCCCGCTGGCGGTCaa                                                                     >  2:269999/1‑149 (MQ=255)                                                                          acCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCaa                                                                     >  3:258506/1‑149 (MQ=255)                                                                            cGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATgg                                                                                                                  >  5:111373/1‑102 (MQ=255)                                                                            cGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATgg                                                                                                                  <  6:111373/102‑1 (MQ=255)                                                                             gagaTCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACgg                                                                  <  4:264584/149‑1 (MQ=255)                                                                                aTCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATc                                                                                         >  8:48654/1‑123 (MQ=255)                                                                                aTCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATc                                                                                         <  7:48654/123‑1 (MQ=255)                                                                                 tCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGc                                                                 >  4:141044/1‑146 (MQ=255)                                                                                       ccAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGACAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCAtt                                                        >  1:76611/1‑149 (MQ=255)                                                                                        cAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTg                                                       >  3:249230/1‑149 (MQ=255)                                                                                                     gCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCAt                                          >  1:89871/1‑149 (MQ=255)                                                                                                       cAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATc                                         >  6:89773/1‑148 (MQ=255)                                                                                                         acacGTGGTGGGTATGCCCACGC‑ACCTCCGGAACGGTgtgcggggtaatacccacctggtgttggccggctggccgctggggccgatctcggtgttggccatgtcatgttcgggcagggccatcgaggtcaactggccggcgcgtggct                                      >  6:80982‑M2/1‑37 (MQ=255)                                                                                                           acCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACAt                                    <  2:76611/149‑1 (MQ=255)                                                                                                             cTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATc                                   >  1:303313/1‑148 (MQ=255)                                                                                                             cTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATc                                   >  8:296322/1‑148 (MQ=255)                                                                                                                gtggGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATCaa                                 <  4:217984/147‑1 (MQ=255)                                                                                                                  gggTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATCAACCt                              >  6:301304/1‑148 (MQ=255)                                                                                                                   ggTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATCAACCTc                             <  3:141044/148‑1 (MQ=255)                                                                                                                         cccACGC‑ACCTCCGGCAAGGTgtgcgtgggcatacccaccaggtgttggccggctggccgctggggccgatctcggtgttggccatgtcatgttcgggcaggg                                                                    >  2:70326‑M2/1‑21 (MQ=255)                                                                                                                         cccACGC‑ACCTCCGGCAAGGTgtgcgtgggcatacccaccaggtgttggccggctggccgctggggccgatctcggtgttggccatgtcatgttcgggcaggg                                                                    <  1:70326‑M2/103‑83 (MQ=255)                                                                                                                         cccACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGa                                       <  6:175918/132‑1 (MQ=255)                                                                                                                         cccACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGa                                       >  5:175918/1‑132 (MQ=255)                                                                                                                         cccACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATCAACCTCAATAGc                       <  4:258506/148‑1 (MQ=255)                                                                                                                          ccACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATCaa                                 >  8:17800/1‑137 (MQ=255)                                                                                                                          ccACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATCAACCTCAATa                         <  7:281451/145‑1 (MQ=255)                                                                                                                          ccACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATCAACCTCAATa                         >  8:281451/1‑145 (MQ=255)                                                                                                                           cACGC‑ACCTCCGGCAAGGTgtgcgtgggcatacccaccaggtgttggccggctggccgctggggccgatctcggtgttggccatgtcatgttcgggcagggacatcgaggtcaactggccggcgcgtggctgcgaccagtacagggca                     <  2:256359‑M2/148‑130 (MQ=255)                                                                                                                                    tCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATCAACCTCAATAGCCTGCAGGCACt            >  6:256531/1‑149 (MQ=255)                                                                                                                                      cGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATCAACCTCAATAGCCTGCAGGCACTg           <  5:89773/148‑1 (MQ=255)                                                                                                                                             gtgtGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATCAACCTCAATAGCCTGCAGGCACTGAGCCagga   <  2:303313/149‑1 (MQ=255)                                                                                                                                              tgtgCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATCAACCTCAATAGCCTGCAGGCACTGAGCCaggag  <  7:296322/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                     TGCCCTGTACTGGTCGCAGCCACGCGCCGGCCAGTTGACCTCGATGGCCCTGCCCGAACATGACATGGCCAACACCGAGATCGGCCCCAGCGGCCAGCCGGCCAACACCTGGTGGGTATGCCCACGC‑ACCTCCGGCAAGGTGTGCGTGGTAGAGCCGTACTTCTACGACATCGATGGCCAGCAGGTGCTGATGACCAGCATCGTGTTCCCGCTGGCGGTCAACGGCAAGATCATTGCCACCCTGTCCATCGACATCAACCTCAATAGCCTGCAGGCACTGAGCCAGGAG  >  NC_002947/4035414‑4035702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.