New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4037143	51 (1.010)	3 (0.070)	3/234	NT	5.7%	intergenic (+49/‑46)	PP_3557/PP_3558	methyl‑accepting chemotaxis transducer/amino acid ABC transporter substrate‑binding protein
	?	NC_002947	= 4037174	53 (1.160)					intergenic (+80/‑15)	PP_3557/PP_3558	methyl‑accepting chemotaxis transducer/amino acid ABC transporter substrate‑binding protein

TCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4036988‑4037143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacctcgtcgtTCGCCACACCTTGGCAGTGGGGCAAGTGTAGACGACGAGGTTTTGTCAGTTTCAGGGCCACTGGCGTGGCCCCGTTCGCTTCAGACGCGGAACTGGTCCATCAGCGCTTGCTGCTGGTTGGCCAGGCTGTTCAGCGACTGGCTGACCC  <  NC_002947/4037174‑4037027                                                                                                                                                                                                                                                                                                                  TCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACC                                                                                                                                                             <  5:58085/149‑1   ACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTC                                                                                                                                                           >  5:307039/1‑149                                                 AGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTTCGCCACACCTTGGCAGTGGGGCAAGTGTAGACGACGAGGT                                                                                                             <  4:162646/149‑1                                                                TGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTTCGCCACACCTCGGCAGTGGGGCAAGTGTAGACGACGAGGTTTTGT                                                                                                        <  5:294997/139‑1                                                                TGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTTCGCCACACCTCGGCAGTGGGGCAAGTGTAGACGACGAGGTTTTGT                                                                                                        >  6:294997/1‑139                                                                                                                                                    CCTCGTCGTTCGCCACACCTTGGCAGTGGGGCAAGTGTAGACGACGAGGTTTTGTCAGTTTCAGGGCCACTGGCGTGGCCCCGTTCGCTTCAGACGCGGAACTGGTCCATCAGCGCTTGCTGCTGGTTGGCCAGGCTGTTCAGCGACTG          >  2:41064/1‑149                                                                                                                                                    CCTAGTCGTTCGCCACACCTTGGCAGTGGGGCAAGTGTAGACGACGAGGTTTTGTCAGTTTCAGGGCCACTGGCGTGGCCCCGTTCGCTTCAGACGCGGAACTGGTCCATCAGCGCTTGCCGCTGGTTGGCCAGGCTGTTCAGCGACTG          <  7:201716/149‑1                                                                                                                                                     CTCGTCGTTCGCCACACCTTGGCAGTGGGGCAAGTGTAGACGACGAGGTTTTGTCAGTTTCAGGGCCACTGGCGTGGCCCCGTTCGCTTCAGACGCGGAACTGGTCCATCAGCGCTTGCTGCTGGTTGGCCAGGCTGTTCAGCGACTGG         <  7:187970/149‑1                                                                                                                                                       CGTCGTTCGCCACACCTTGGCAGTGGGGCAAGTGTAGACGACGAGGTTTTGTCAGTTTCAGGGCCACTGGCGTGGCCCCGTTCGCTTCAGACGCGGAACTGGTCCATCAGCGCTTGCTGCTGGTTGGCCAGGCTGTTCAGCGACTGGCT       >  6:307039/1‑149                                                                                                                                                       CGTCGTTCGCCACACCTTGGCAGTGGGGCAAGTGTAGACGACGAGGTTTTGTCAGTTTCAGGGCCACTGGCGTGGCCCCGTTCGCTTCAGACGCGGAACTGGTCCATCAGCGCTTG                                        <  3:82673/116‑1                                                                                                                                                       CGTCGTTCGCCACACCTTGGCAGTGGGGCAAGTGTAGACGACGAGGTTTTGTCAGTTTCAGGGCCACTGGCGTGGCCCCGTTCGCTTCAGACGCGGAACTGGTCCATCAGCGCTTG                                        >  4:82673/1‑116                                                                                                                                                            TTCGCCACACCTTGGCAGTGGGGCAAGTGTAGACGACGAGGTTTTGTCAGTTTCAGGGCCACTGGCGTGGCCCCGTTCGCTTCAGACGCGGAACTGGTCCATCAGCGCTTGCTGCTGGTTGGCCAGGCTGTTCAGCGACTGGCTGACCC  <  1:41064/149‑1                                                                                                                                                                                                                                                                                                                  TCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4036988‑4037143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacctcgtcgtTCGCCACACCTTGGCAGTGGGGCAAGTGTAGACGACGAGGTTTTGTCAGTTTCAGGGCCACTGGCGTGGCCCCGTTCGCTTCAGACGCGGAACTGGTCCATCAGCGCTTGCTGCTGGTTGGCCAGGCTGTTCAGCGACTGGCTGACCC  <  NC_002947/4037174‑4037027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.