| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4075742 | NA (NA) | 13 (0.270) | 9/244 | NT | 24.2% | intergenic (‑328/+113) | PP_3586/tpx | transposase/2‑Cys peroxiredoxin |
| ? | NC_002947 | = 4957566 | 43 (0.850) | intergenic (‑49/+114) | fliH/fliG | flagellar assembly protein FliH/flagellar motor switch protein | |||||
GCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATctcctac‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4075597‑4075742‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGACCTGATCCGTGCCCGCGACCTCGAGGGCGTGGATGTGTGGACGCTGCCAAGCTTCGACCCGGAACCGGAGCCCGAAC < NC_002947/4957566‑4957412 GCACACGAACCCTAACAAAGCAATAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTGGCTGCGTAAGTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCTGCCCGGAAGGGCTGGGTGATCTC < 7:126597/149‑1GCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTC < 5:255823/149‑1GCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATC < 1:114006/147‑1 CACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCC < 6:288365/149‑1 ACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCC > 6:288507/1‑148 ACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCC > 3:179642/1‑148 ACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCC > 3:271848/1‑148 ACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCC > 6:13339/1‑148 CACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCTTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTA < 5:227324/149‑1 CACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTA < 6:109231/149‑1 ACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACATCGCAGCCCGGAAGGGCTGGGTGATCTC > 6:242766/1‑145 ACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTAC > 6:19726/1‑149 ACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTAACGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCCTCGCTGCGGAAATGAAGCCGTACACCTCATGTTTGCTGCGCCACAGCGCAGCACGGAAGGGCTGGGTGATATCCTA > 6:182873/1‑148 ACGAACCCTAACAAAGCAAAAGGCCGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCACCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGTCGTGGGTGAAATCCTA > 4:272709/1‑148 CGAACCGTAACATAGCTAAAGGGGGCTGGCCGTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGGGGTTCAGCTCATGTTTGCTTCGCGACAGCGCAGCCCGGAATGGCTGGGTGATCTCCTACA < 8:73627/149‑1 CGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACA < 1:120229/149‑1 CGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACA < 4:271848/149‑1 TAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCC > 5:163635/1‑138 TAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCC < 6:163635/138‑1 AACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATC > 5:281887/1‑134 AACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATC < 6:281887/134‑1 AAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAAGGGACCGTGT < 4:179642/149‑1 AAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTC > 8:189292/1‑133 AAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTC < 7:189292/133‑1 gAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGAGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAAGGGACCGTGTCGGC > 8:128961/2‑149 CAAACGGGGGCGGGCCCTACGGGGCAAACCGCCTTTTCTTTTTAAAAAATGTCAGCGGCGCTGCGTAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTC < 7:109626/130‑1 CGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATG > 5:187399/1‑149 CGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAA > 6:107120/1‑137 CGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAA < 5:107120/137‑1 CGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTC < 5:172929/100‑1 CGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTC > 6:172929/1‑100 T‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGAGCGACAGCGCAGCCCTTAAGGGCTGGGTGATCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAA < 7:128961/148‑1 ACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGACCTGATCCGTG > 2:254125/1‑149 CGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGACCTGATCCGTGCCCGCGACCTCGAGGGCGTGGATGTGT < 6:187399/148‑1 GCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTT > 5:150396/1‑66 GCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTT < 6:155153/66‑1 GCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTT < 6:150396/66‑1 GCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTT > 5:155153/1‑66 GGAAGGGCTGGGTGATCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGACCTGATCTGTGCCCGCGACCTTGAGGGCGTGGATGTGTGGACGCTGCCAAGCTTC < 5:98266/149‑1 cgTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACTTGACAGCATGCGTACCAAAGAACACCACCCCAGGGACCTGATCCGTGCCCGCGACCTCGAGGGCGTGGATGTGTGGACGCTGGCAAGCTTCGACCCGGAACCG < 5:265990/141‑1 TACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGACCTGATCCGTGCCCGCGACCTCGAGGGCGTGGATGTGTGGACGCTGCCAAGCTTCGACCCGGAACCGGAGCCCG > 2:302220/1‑148 ACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGACCTGATCCGTGCCCGCGACCTCGAGGGCGTGGATGTGTGGACGCTGCCAAGC < 6:276439/125‑1 ACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGACCTGATCCGTGCCCGCGACCTCGAGGGCGTGGATGTGTGGACGCTGCCAAGC > 5:276439/1‑125 CAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGACCTGATCCGTGCCCGCGACCTCGAGGGCGTGGATGTGTGGACGCTGCCAAGCTTCGACCCGGAACCGGAGCCCGAAC > 6:288460/1‑149 GCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTT‑CAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATctcctac‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4075597‑4075742‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTCCTACAAGGGACCGTGTCGGCCGAACATGGTTTGAGAACATGACAGCATGCCCACCAAAGAACACCACCCCAGCGACCTGATCCGTGCCCGCGACCTCGAGGGCGTGGATGTGTGGACGCTGCCAAGCTTCGACCCGGAACCGGAGCCCGAAC < NC_002947/4957566‑4957412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |