New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4075742 | NA (NA) | 13 (0.270) | 9/244 | NT | 24.2% | intergenic (‑328/+113) | PP_3586/tpx | transposase/2‑Cys peroxiredoxin |
? | NC_002947 | = 4957566 | 43 (0.850) | intergenic (‑49/+114) | fliH/fliG | flagellar assembly protein FliH/flagellar motor switch protein |
TAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTA > NC_002947/4075609‑4075884 | tAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGt > 4:166313/1‑149 (MQ=33) gCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGcc < 7:195994/149‑1 (MQ=39) aaaaGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCtt > 4:121499/1‑149 (MQ=40) cggcTGGCCCTACCGGGCCAAGCGCCTTTTCTTTTTCAATATGTCAGCGTCGCTGCGGAACTGAAGCCGTAGAACTCTTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGTATGTCACAGCCTTTGaaaa < 1:38908/149‑1 (MQ=14) gcTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACt < 3:166313/149‑1 (MQ=255) gCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCACCGTCGCTGCGGAACTTATGCCTTACACCTCATGTTTTCTGCGCGACAGCGCAGACCGTTAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACtgt < 5:22498/147‑1 (MQ=17) cGGGCCAACCGCCTTTTCATTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGt > 5:91624/1‑149 (MQ=255) gCCAACCGCCTTTTCATTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGt < 6:91624/149‑1 (MQ=255) ccGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAg > 7:116456/1‑149 (MQ=255) cGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGc < 7:5390/149‑1 (MQ=255) cGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGc > 3:192901/1‑149 (MQ=255) cttttcttttTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCggg > 6:58672/1‑149 (MQ=255) ttttcttttTCAAAATTTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGAt < 8:171751/106‑1 (MQ=17) ttttcttttTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGAt > 7:171751/1‑106 (MQ=32) tttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTAccc < 5:288507/148‑1 (MQ=255) tttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCcg > 4:19827/1‑149 (MQ=255) tCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCcgc < 5:213821/148‑1 (MQ=255) tCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGc > 1:306121/1‑148 (MQ=255) aGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa < 8:165934/148‑1 (MQ=255) gCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTATGAGCGTGTTTACCCGCGAAGAGGCCAGCACAgg < 6:155357/149‑1 (MQ=255) gCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAgg < 4:192901/149‑1 (MQ=255) gCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAg < 1:177260/148‑1 (MQ=255) cGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTAc < 5:19726/149‑1 (MQ=255) aaGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGAcgccc > 2:26440/1‑149 (MQ=255) aaGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGAcgc < 3:288386/147‑1 (MQ=255) cacCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGACGCCAGCACAGGCTACAGACGCCCGCCCTGc < 1:26440/148‑1 (MQ=255) cTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCa > 8:9089/1‑149 (MQ=255) tCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGACCGCCCTGCCCCAc > 3:161446/1‑149 (MQ=255) aTGTTTGTTGCGCGACTGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCAc < 8:116456/147‑1 (MQ=255) aTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACg < 3:121499/148‑1 (MQ=255) tttGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAAt > 2:4137/1‑149 (MQ=255) gctgcGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATcc < 7:9089/148‑1 (MQ=255) cgcgACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTa < 5:58672/147‑1 (MQ=255) gcgACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACtt < 6:112369/149‑1 (MQ=255) gACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCa < 3:19827/149‑1 (MQ=255) gcAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTAcag < 3:71549/149‑1 (MQ=255) gCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTc < 2:314197/149‑1 (MQ=255) cTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCg > 2:183026/1‑149 (MQ=255) gggTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCg > 5:24320/1‑147 (MQ=255) ggggATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTa < 7:192285/145‑1 (MQ=255) ggTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTa < 6:326809/148‑1 (MQ=255) | TAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTA > NC_002947/4075609‑4075884 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |