New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4110015 =	31 (0.620)	3 (0.060)	3/242	NT	9.2%	coding (1837/2991 nt)	PP_3616	membrane protein
	?	NC_002947	4110075 =	30 (0.640)					coding (1897/2991 nt)	PP_3616	membrane protein

CCCCAGGGTGTATTCCGGTGCATCGCTCTTCTGCAGGCTGTTGTAGGCCGTCTTGAGCGATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGGGTTTCGCACGCGCAGTGGTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4110170‑4110015 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggtggtGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCGGGGTGATCGGTGCAGCGGCGGCAACGTTGGTCA  >  NC_002947/4110075‑4110222                                                                                                                                                                                                                                                                                                                  CCCCAGGGTGTATTCCGGTGCATCGCTCTTCTGCAGGCTGTTGTAGGCCGTCTTGAGCGATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGGGTTTCGCACGCGCAG                                                                                                                                                             >  6:52120/1‑149  CCCAGGGTGTATTCCGGTGCATCGCTCTTCTGCAGGCTGTTGTAGGCCGTCTTGAGCGATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGGGTTTCGCACGCGCAGT                                                                                                                                                            >  7:38831/1‑149    CAGGGTGTATTCCGGTGCATCGCTCTTCTGCAGGCTGTTGTAGGCCGTCTTGAGCGATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGGGTTTCGCACGCGCAGTGG                                                                                                                                                          >  4:115541/1‑149      GGGTGTATTCCGGTGCATCGCTCTTCTGCAGGCTGTTGTAGGCCGTCTTGAGCGATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGGGTTTCGCACGCGCAGTGGTG                                                                                                                                                        <  2:27146/149‑1                                                                                     CGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGGGTTTCGCACGCGCAGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATG                                                                          >  2:28454/1‑148                                                                                                CACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGGGTTTCGCACGCGCAGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCG                                                                             <  5:61654/134‑1                                                                                                CACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGGGTTTCGCACGCGCAGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCG                                                                             >  6:61654/1‑134                                                                                                                                                       GGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTG‑TCGTGGTGATCGGTGCAGCGGCGGCAACGTTG      <  6:205879/149‑1                                                                                                                                                       GGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGAT                                                                           >  7:156247/1‑81                                                                                                                                                       GGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGAT                                                                           <  8:156247/81‑1                                                                                                                                                           GTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCGG                                  >  1:34789/1‑118                                                                                                                                                           GTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCGG                                  <  2:34789/118‑1                                                                                                                                                            TGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCGGGGTGATCGGTGCAGCGGCGGCAACGTTGGTCA  <  2:320851/149‑1                                                                                                                                                                                                                                                                                                                  CCCCAGGGTGTATTCCGGTGCATCGCTCTTCTGCAGGCTGTTGTAGGCCGTCTTGAGCGATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGGGTTTCGCACGCGCAGTGGTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4110170‑4110015 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggtggtGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCGGGGTGATCGGTGCAGCGGCGGCAACGTTGGTCA  >  NC_002947/4110075‑4110222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.