New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4110015 =	31 (0.620)	3 (0.060)	3/242	NT	9.2%	coding (1837/2991 nt)	PP_3616	membrane protein
	?	NC_002947	4110075 =	30 (0.640)					coding (1897/2991 nt)	PP_3616	membrane protein

GGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATA  >  NC_002947/4109867‑4110160                                                                                                                                                     |                                                                                                                                                  tgaccaacgttgccgccgctgcaccgatcaccccgaacacagatgaagcgaaccccagggtgtattccggtgcatcgctcttctgcaggctgttgtaggccgtcttgagcgataagatgttgaaccacagcatccccgcgtttaaacca                                                                                                                                                   <  2:320851‑M1/1‑1 (MQ=255)     gcgcgcTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGaccac                                                                                                                                               >  8:145008/1‑149 (MQ=32)     gcgcgcTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGaccac                                                                                                                                               <  7:19483/149‑1 (MQ=32)      caacgttgccgccgctgcaccgatcaccacgacacagatgaagcgaaccccagggtgtattccggtgcatcgctcttctgcaggctgttgtaggccgtcttgagcgataagatgttgaaccacagcatccccgcgtttaaaccaccacc                                                                                                                                              <  6:205879‑M1/6‑1 (MQ=255)             tCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTgc                                                                                                                                         <  7:145008/147‑1 (MQ=32)                aaTCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTg                                                                                                                                    >  7:113473/1‑149 (MQ=32)                     ccGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGaaa                                                                                                                               >  8:44687/1‑149 (MQ=32)                     ccGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGaaa                                                                                                                               <  8:248788/149‑1 (MQ=32)                          cAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCaa                                                                                                                          >  8:38831/1‑149 (MQ=32)                             gCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACtt                                                                                                                       >  4:279214/1‑149 (MQ=32)                                 ttACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGATGAGCGGCATGGCGCAGGTTGAAGAGATGAACGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCtt                                                                                                                   <  7:54786/149‑1 (MQ=17)                                 ccgaacacagatgaagcgaaccccagggtgtattccggtgcatcgctcttctgcaggctgttgtaggccgtcttgagcgataagatgttgaaccacagcatccccgcgtttaaaccac                                                                                                                                                  >  1:34789‑M1/117‑118 (MQ=255)                                 ccgaacacagatgaagcgaaccccagggtgtattccggtgcatcgctcttctgcaggctgttgtaggccgtcttgagcgataagatgttgaaccacagcatccccgcgtttaaaccac                                                                                                                                                  <  2:34789‑M1/2‑1 (MQ=255)                                    cGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTggg                                                                                                                <  2:201343/149‑1 (MQ=32)                                    cGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTgg                                                                                                                 <  8:219770/148‑1 (MQ=32)                                          aCCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTc                                                                                                          <  1:87973/149‑1 (MQ=31)                                                         aggTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCggtggt                                                                                           <  7:44687/149‑1 (MQ=32)                                                          ggTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCggtggtg                                                                                          <  3:84833/149‑1 (MQ=32)                                                                         catcgctcttctgcaggctgttgtaggccgtcttgagcgataagatgttgaaccacagcatccccgcgtttaaaccACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAAcgcg                                                                            >  2:28454‑M1/77‑148 (MQ=255)                                                                          atcgctcttctgcaggctgttgtaggccgtcttgagcgataagatgttgaaccacagcatccccgcgtttaaaccaccacc                                                                                                                                              >  7:156247‑M1/76‑81 (MQ=255)                                                                          atcgctcttctgcaggctgttgtaggccgtcttgagcgataagatgttgaaccacagcatccccgcgtttaaaccaccacc                                                                                                                                              <  8:156247‑M1/6‑1 (MQ=255)                                                                            cgctcttctgcaggctgttgtaggccgtcttgagcgataagatgttgaaccacagcatccccgcgtttaaaccACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCggtggtggtg                                                                                       <  5:61654‑M1/61‑1 (MQ=255)                                                                            cgctcttctgcaggctgttgtaggccgtcttgagcgataagatgttgaaccacagcatccccgcgtttaaaccACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCggtggtggtg                                                                                       >  6:61654‑M1/74‑134 (MQ=255)                                                                               cGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGCGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCgg                                                                           >  6:156680/1‑143 (MQ=17)                                                                               cGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGCGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCgg                                                                           <  5:156680/143‑1 (MQ=17)                                                                                   aTGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCtgtg                                                                 >  7:85918/1‑149 (MQ=32)                                                                                      gcgcAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGt                                                               <  8:113473/148‑1 (MQ=32)                                                                                      gcgcAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGt                                                               >  3:115541/1‑148 (MQ=32)                                                                                                 agagATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTAt                                                   >  5:284864/1‑149 (MQ=32)                                                                                                  gagaTGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATc                                                  >  7:302752/1‑149 (MQ=32)                                                                                                                gcgcATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGcc                                     >  3:145102/1‑148 (MQ=32)                                                                                                                   cATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACg                                        <  7:159318/142‑1 (MQ=32)                                                                                                                   cATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACg                                        >  8:159318/1‑142 (MQ=32)                                                                                                                         gggTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGc                            <  8:302752/148‑1 (MQ=32)                                                                                                                            tAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGc                        <  3:279214/149‑1 (MQ=32)                                                                                                                                cGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCag                      >  5:52120/1‑147 (MQ=32)                                                                                                                                 gCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGc                        >  4:93578/1‑144 (MQ=32)                                                                                                                                 gCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGc                        <  3:93578/144‑1 (MQ=32)                                                                                                                                    caGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGc                <  7:230347/149‑1 (MQ=34)                                                                                                                                         tCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTAACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATg            >  5:137116/1‑148 (MQ=21)                                                                                                                                           cATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCAc         <  7:217484/149‑1 (MQ=34)                                                                                                                                           cATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCAc         >  5:205879/1‑149 (MQ=34)                                                                                                                                                aGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGttt                                                                                   <  3:264399/70‑1 (MQ=35)                                                                                                                                                aGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGttt                                                                                   >  4:264399/1‑70 (MQ=35)                                                                                                                                                aGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGaa    <  8:85918/149‑1 (MQ=34)                                                                                                                                                   tGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATa  >  5:110239/1‑148 (MQ=34)                                                                                                                                                     |                                                                                                                                                  GGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATA  >  NC_002947/4109867‑4110160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.