New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4110015 =	31 (0.620)	3 (0.060)	3/242	NT	9.2%	coding (1837/2991 nt)	PP_3616	membrane protein
	?	NC_002947	4110075 =	30 (0.640)					coding (1897/2991 nt)	PP_3616	membrane protein

GAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCGGGGTGATCGGTGCAGCGGCGGCAACGTTGGTCA  >  NC_002947/4109939‑4110222                                                                                                                                         |                                                                                                                                                    catcgctcttctgcaggctgttgtaggccgtcttgagcgataagatgttgaaccacagcatccccgcgtttaaaccACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAAcgcg                                                                                                                                          >  2:28454‑M1/77‑148 (MQ=255)    cgctcttctgcaggctgttgtaggccgtcttgagcgataagatgttgaaccacagcatccccgcgtttaaaccACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCggtggtggtg                                                                                                                                                     <  5:61654‑M1/61‑1 (MQ=255)    cgctcttctgcaggctgttgtaggccgtcttgagcgataagatgttgaaccacagcatccccgcgtttaaaccACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCggtggtggtg                                                                                                                                                     >  6:61654‑M1/74‑134 (MQ=255)       cGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGCGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCgg                                                                                                                                         <  5:156680/143‑1 (MQ=17)       cGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGCGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCgg                                                                                                                                         >  6:156680/1‑143 (MQ=17)           aTGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCtgtg                                                                                                                               >  7:85918/1‑149 (MQ=32)              gcgcAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGt                                                                                                                             <  8:113473/148‑1 (MQ=32)              gcgcAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGt                                                                                                                             >  3:115541/1‑148 (MQ=32)                         agagATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTAt                                                                                                                 >  5:284864/1‑149 (MQ=32)                          gagaTGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATc                                                                                                                >  7:302752/1‑149 (MQ=32)                                        gcgcATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGcc                                                                                                   >  3:145102/1‑148 (MQ=32)                                           cATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACg                                                                                                      >  8:159318/1‑142 (MQ=32)                                           cATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACg                                                                                                      <  7:159318/142‑1 (MQ=32)                                                 gggTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGc                                                                                          <  8:302752/148‑1 (MQ=32)                                                    tAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGc                                                                                      <  3:279214/149‑1 (MQ=32)                                                        cGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCag                                                                                    >  5:52120/1‑147 (MQ=32)                                                         gCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGc                                                                                      <  3:93578/144‑1 (MQ=32)                                                         gCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGc                                                                                      >  4:93578/1‑144 (MQ=32)                                                            caGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGc                                                                              <  7:230347/149‑1 (MQ=34)                                                                 tCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTAACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATg                                                                          >  5:137116/1‑148 (MQ=21)                                                                 cgcgtttaaaccaccaccaccgccggaggtgagtaacccaaggaagttgggtttcgcacgcgcagtggtggtGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATg                                                                          >  2:28454‑M2/73‑148 (MQ=255)                                                                   cATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCAc                                                                       <  7:217484/149‑1 (MQ=34)                                                                   cATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCAc                                                                       >  5:205879/1‑149 (MQ=34)                                                                        aGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGttt                                                                                                                                                 <  3:264399/70‑1 (MQ=35)                                                                        aGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGttt                                                                                                                                                 >  4:264399/1‑70 (MQ=35)                                                                        aGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGaa                                                                  <  8:85918/149‑1 (MQ=34)                                                                           tGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATa                                                                >  5:110239/1‑148 (MQ=34)                                                                            caccaccaccgccggaggtgagtaacccaaggaagttgggtttcgcacgcgcagtggtggtGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCg                                                                             <  5:61654‑M2/73‑1 (MQ=255)                                                                            caccaccaccgccggaggtgagtaacccaaggaagttgggtttcgcacgcgcagtggtggtGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCg                                                                             >  6:61654‑M2/62‑134 (MQ=255)                                                                               CACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACAccc                                                           <  2:27146‑M1/149‑1 (MQ=255)                                                                                 CCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTg                                                         >  4:115541‑M1/1‑149 (MQ=255)                                                                                   ACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTggg                                                       >  7:38831‑M1/1‑149 (MQ=255)                                                                                    CTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTgggg                                                      >  6:52120‑M1/1‑149 (MQ=255)                                                                                        gcgTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCg                                                  <  6:284864/149‑1 (MQ=34)                                                                                             cGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCa                                             >  1:320851/1‑149 (MQ=34)                                                                                              gAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGc                                                 <  4:151895/144‑1 (MQ=34)                                                                                              gAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGc                                                 >  3:151895/1‑144 (MQ=34)                                                                                                    cAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTgtgt                                      >  5:288947/1‑149 (MQ=35)                                                                                                     aaCTTCCTTGGGTTACTCACCTCCGGCGGTGGGGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGATCAGCGAAGCACCGGAATACGCCCTGGGGTGCGCTTCATCTGTGtt                                     >  4:163754/1‑149 (MQ=11)                                                                                                            ttGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTc                                              <  2:260050/133‑1 (MQ=34)                                                                                                            ttGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTc                                              >  1:260050/1‑133 (MQ=34)                                                                                                              tcggtACGCACCCCCGGCGGTGGTGGTGGTGTCAACGCGGGGATGCTGTGGTTCAACACCTTATCGCTCAAGACGCCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCGGGGGGAt                            <  8:147551/145‑1 (MQ=11)                                                                                                                            cggcggTGGTGGTGGTTTACACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCGGGGTGATCGGTGCAgcggcg               <  3:163754/148‑1 (MQ=38)                                                                                                                            cggcggTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCGGGGTGATCGGTGCAgcggcg               <  1:106707/148‑1 (MQ=38)                                                                                                                                   ggtggtGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGAt                                                                           >  7:156247‑M2/7‑81 (MQ=255)                                                                                                                                   ggtggtGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGAt                                                                           <  8:156247‑M2/75‑1 (MQ=255)                                                                                                                                   ggtggtGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTG‑TCGTGGTGATCGGTGCAGCGGCGGCAACGTTg      <  6:205879‑M2/143‑1 (MQ=255)                                                                                                                                       gtGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCgg                                  <  2:34789‑M2/116‑1 (MQ=255)                                                                                                                                       gtGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCgg                                  >  1:34789‑M2/3‑118 (MQ=255)                                                                                                                                        tGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCGGGGTGATCGGTGCAGCGGCGGCAACGTTGGTCa  <  2:320851‑M2/148‑1 (MQ=255)                                                                                                                                         |                                                                                                                                                    GAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCGGGGTGATCGGTGCAGCGGCGGCAACGTTGGTCA  >  NC_002947/4109939‑4110222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.