| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4139337 = | 45 (0.890) | 5 (0.100) | 4/248 | NT | 11.1% | coding (270/1041 nt) | PP_3644 | monooxygenase subunit |
| ? | NC_002947 | 4139373 = | 37 (0.760) | coding (306/1041 nt) | PP_3644 | monooxygenase subunit | |||||
GCACCATCTCGCGCAGCGCCTTGCCGCCGTCGGTGGCCGGCATGCCACCTGCCATGCGGTCGAACTCGAACTGGTAGGCACCGCGGGCCAGGCCCACTTCCATGCGGCCGTTGCTGATCACGTCGAGCAGGGCGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4139473‑4139337‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcatGGAAGTGGGCCTGGCCCGCGGTGCCTACCAGTTCGAGTTCGACCGCATGGCAGGTGGCATGCCGGCCACCGACGGCGGCAAGGCGCTGCGCGAGATGGTGCCGGTGGTGCGCAAGCTGTGGGAAGGCGACTACGCCCACGACGGTGAA > NC_002947/4139373‑4139520 GCACCATCTCGCGCAGCGCCTTGCCGCCGTCGGTGGCCGGCATGCCACCTGCCATGCGGTCGAACTCGAACTGGTAGGCACCGCGGGCCAGGCCCACTTCCATGCGGCCGTTGCTGATCACGTCGAGCAGGGC < 5:67187/133‑1GCACCATCTCGCGCAGCGCCTTGCCGCCGTCGGTGGCCGGCATGCCACCTGCCATGCGGTCGAACTCGAACTGGTAGGCACCGCGGGCCAGGCCCACTTCCATGCGGCCGTTGCTGATCACGTCGAGCAGGGC > 6:67187/1‑133 ATGCGGCCGTTGCTGATCACGTCGAGCAGGGCGCATGGAAGTGGGCCTGGCCCGCGGTGCCTACCAGTTCGAGTTCGACCGCATGGCAGGTGGCATGCCGGCCACCGACGGCGGCAAGGCGCTGCGCGAGATGGTGCCGGTGGTGCGC > 6:329944/1‑148 ATGCGGCCGTTGCTGATCACGTCGAGCAGGGCGCATGGAAGTGGGCCTGGCCCGCGGTGCCTACCAGTTCGAGTTCGACCGCATGGCAGGTGGCATGCCGGCCACCGACGGCGGCAAGGCGCTGCGCGAGA < 3:200830/131‑1 ATGCGGCCGTTGCTGATCACGTCGAGCAGGGCGCATGGAAGTGGGCCTGGCCCGCGGTGCCTACCAGTTCGAGTTCGACCGCATGGCAGGTGGCATGCCGGCCACCGACGGCGGCAAGGCGCTGCGCGAGA > 4:200830/1‑131 TGCGGCCGTTGCTGATCACGTCGAGCAGGGCGCATGGAAGTGGGCCTGGCCCGCGGTGCCTACCAGTTCGAGTTCGACCGAATGGCAGGTGGCATGCCGGCCACCGACGGC > 6:143468/1‑111 TGCGGCCGGTGCTGATCACGTCGAGCAGGGCGCATGGAAGTGGGCCTGGCCCGCGGTGCCTACCAGTTCGAGTTCGACCGCATGGCAGGTGGCATGCCGGCCACCGACGGC < 5:143468/111‑1 CATGGAAGTGGGCCTGGCCCGCGGTGCCTACCAGTTCGAGTTCGACCGCATGGCAGGTGGCATGCCGGCCACCGACGGCGGCAAGGCGCTGCGCGAGATGGTGCCGGTGGTGCGCAAGCTGTGGGAAGGCGACTACGCCCACGACGGTG < 4:287228/149‑1 TGGAAGTGGGCCTGGCCCGCGGTGCCTACCAGTTCGAGTTCGACCGCATGGCAGGTGGCATGCCGGCCACCGACGGCGGCAAGGCGCTGCGCGAGATGGTGCCGGTGGTGCGCAAGCTGTGGGAAGGCGACTACGCCCACGACGGTGAA < 5:329944/149‑1 GCACCATCTCGCGCAGCGCCTTGCCGCCGTCGGTGGCCGGCATGCCACCTGCCATGCGGTCGAACTCGAACTGGTAGGCACCGCGGGCCAGGCCCACTTCCATGCGGCCGTTGCTGATCACGTCGAGCAGGGCGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4139473‑4139337‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcatGGAAGTGGGCCTGGCCCGCGGTGCCTACCAGTTCGAGTTCGACCGCATGGCAGGTGGCATGCCGGCCACCGACGGCGGCAAGGCGCTGCGCGAGATGGTGCCGGTGGTGCGCAAGCTGTGGGAAGGCGACTACGCCCACGACGGTGAA > NC_002947/4139373‑4139520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |