New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 448547730 (0.600)5 (0.100) 5/246 NT 13.8% coding (653/1302 nt) PP_3977 hypothetical protein
?NC_002947 = 4485516 34 (0.710)coding (692/1302 nt) PP_3977 hypothetical protein

GGGGATGAAAATCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4485326‑4485477
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttg‑‑cTGAAGCAGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGTGCAAGGATGAAGTATCGCCTGTATTCGGCGTCGAGATTGCGCAAGCGTATAGCGACAGTGAGGCGAGCGTAGGCTTCGGTTTTTCTACTGTCACTGTCATCCATGCA  <  NC_002947/4485516‑4485371
                                                                                                                                                                                                                                                                                                            
GGGGATGAAAATCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCT                                                                                                                                                         >  4:65518/1‑149
 GGGATGAAAATCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTT                                                                                                                                                        <  3:157687/149‑1
 GGGATGAAAATCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTT                                                                                                                                                        >  4:157687/1‑149
       AAAATCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCATACGCTCGCATCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGTCGATACTTCAACCTTGaact                                                                                                                                                   >  5:130577/1‑144
                        TTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAGGCCGAGCTCCT                                                                                                                                 >  2:318393/1‑149
                                      GCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CTGAAGCAGGCCGAGCTCCTTAGAGCTCAATTGCT                                                                                                                  >  3:305097/1‑148
                                            CTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGT                                                                                                             <  1:318393/149‑1
                                                   GATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CTGAAGCAGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGTGCAAGGAT                                                                                                     <  4:305097/148‑1
                                                     TGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CTGAAGCAGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGTGCAAGGATGAA                                                                                                  <  1:189181/149‑1
                                                                                                                                                      G‑‑CTGAAGCAGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGTGCAAGGATGAAGTATCGCCTGTATTCGGCGTCGAGATTGCGCAAGCGTATAGCGACAGTGAGGCGAGCGTAGGCTTCGGTTTTTCTACTGTCACTGTCATCCATGCA  <  8:41944/148‑1
                                                                                                                                                                                                                                                                                                            
GGGGATGAAAATCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4485326‑4485477
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttg‑‑cTGAAGCAGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGTGCAAGGATGAAGTATCGCCTGTATTCGGCGTCGAGATTGCGCAAGCGTATAGCGACAGTGAGGCGAGCGTAGGCTTCGGTTTTTCTACTGTCACTGTCATCCATGCA  <  NC_002947/4485516‑4485371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.