New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4485477	30 (0.600)	5 (0.100)	5/246	NT	13.8%	coding (653/1302 nt)	PP_3977	hypothetical protein
	?	NC_002947	= 4485516	34 (0.710)					coding (692/1302 nt)	PP_3977	hypothetical protein

AGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCCTGTCCGTAGAGGTCTTCCGGCGGCTCGGATT  >  NC_002947/4485368‑4485654                                                                                                                                                     |                                                                                                                                           agCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCa                                                                                                                                            <  2:23920/149‑1 (MQ=255)  gCTGCATGGATGACAGTGACAGTAGAAAAACCGAATCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATATCGACTCCGAATACAGGCTATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCa                                                                                                                                            <  6:130577/148‑1 (MQ=255)  gCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCa                                                                                                                                            <  6:125606/148‑1 (MQ=255)    tGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAgc                                                                                                                                          <  8:41944‑M2/148‑3 (MQ=255)          gATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCt                                                                                                                                    <  2:164692/148‑1 (MQ=255)                        tAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTAc                                                                                                                                  >  8:33457/1‑136 (MQ=255)                        tAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTAc                                                                                                                                  <  7:33457/136‑1 (MQ=255)                                    aGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTcc                                                                                                         <  3:65518/149‑1 (MQ=255)                                            cTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGATGCCAGACATAGGGAGATCGTCCCTGAagag                                                                                                 >  7:206010/1‑149 (MQ=255)                                                    aCTGTCTCTATACGCTTGCGAAATCTCGACTCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCATTTGAGCTCTATGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCGAGACATTGGGAGATCGTCCCTGAAGAGGGGTTc                                                                                           <  8:206010/147‑1 (MQ=255)                                                              taCGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCaa                                                                                <  5:200569/148‑1 (MQ=255)                                                                   ttGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGc                                                                          >  5:45626/1‑149 (MQ=255)                                                                   ttGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGc                                                                          >  2:230845/1‑149 (MQ=255)                                                                         aaTCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCgt                                                                    >  5:213369/1‑149 (MQ=255)                                                                               gACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGa                                                              <  8:178782/149‑1 (MQ=255)                                                                                  gCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGAccc                                                           <  7:265986/149‑1 (MQ=255)                                                                                     gAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGa                                                         >  2:243092/1‑148 (MQ=255)                                                                                           aGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGAGACCGTGTATGACCCGAAAAAGCt                                                  >  7:136441/1‑149 (MQ=255)                                                                                            ggCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTc                                                 <  6:45626/149‑1 (MQ=255)                                                                                             gCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCg                                                <  1:230845/149‑1 (MQ=255)                                                                                             gCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCg                                                >  4:233895/1‑149 (MQ=255)                                                                                               gATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGACCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCgg                                               >  8:149225/1‑148 (MQ=255)                                                                                                aTACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGaa                                             <  1:44258/149‑1 (MQ=255)                                                                                                    ttCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAgcaaggatgaagtatcgcctgtattcggcgtcgagattgcgcaagcgtatagcgacagtgaggcgagcgtaggcttcggtttttctactgtcactgtca                                         <  1:189181‑M2/149‑100 (MQ=255)                                                                                                    ttCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTAAATCAGGCGACCTTGTATGACCCGAAAAAGCTATGAatca                                          >  6:266091/1‑148 (MQ=255)                                                                                                       aTCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAgcaaggatgaagtatcgcctgtattcggcgtcgagattgcgcaagcgtatagcgacagtgaggcgagcgtaggcttcggtttttctactgtcactgtcatc                                       <  4:305097‑M2/148‑102 (MQ=255)                                                                                                          cTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTgg                                   <  7:41944/149‑1 (MQ=255)                                                                                                               aCTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAgtgcaaggatgaagtatcgcctgtattcggcgtcgagattgcgcaagcgtatagcgacagtgaggcgagcgtaggcttcggtttttctactgtcactgtcatccatgcag                              <  1:318393‑M2/149‑111 (MQ=255)                                                                                                                cTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCCTGTc                             <  3:233895/149‑1 (MQ=255)                                                                                                                 tGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTc                                                 >  5:243154/1‑128 (MQ=255)                                                                                                                 tGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTc                                                 <  6:243154/128‑1 (MQ=255)                                                                                                                  gAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCCTGTCCg                           >  7:296282/1‑149 (MQ=255)                                                                                                                    aGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAgcaaggatgaagtatcgcctgtattcggcgtcgagattgcgcaagcgtatagcgacagtgaggcgagcgtaggcttcggtttttctactgtcactgtcatccatgcagctctgc                          >  3:305097‑M2/1‑34 (MQ=255)                                                                                                                      cAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCCTGTCCGTa                         >  6:36181/1‑147 (MQ=255)                                                                                                                            aGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCCTGTCCGTAGAGGTCtt                 >  8:33768/1‑149 (MQ=255)                                                                                                                                ctAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCCTGTCCGTAGAGGTCTTCcgg             >  2:117891/1‑149 (MQ=255)                                                                                                                                   aGGAGCTCGGCCTGCTTCAgtgcaaggatgaagtatcgcctgtattcggcgtcgagattgcgcaagcgtatagcgacagtgaggcgagcgtaggcttcggtttttctactgtcactgtcatccatgcagctctgcagcaaatccccgaa          >  2:318393‑M2/1‑19 (MQ=255)                                                                                                                                    ggAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCCTGTCCGTAGAGGTCTTCCggcggc         <  1:117891/149‑1 (MQ=255)                                                                                                                                         tCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGAc                                                                       <  3:100112/82‑1 (MQ=255)                                                                                                                                         tCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGAc                                                                       >  4:100112/1‑82 (MQ=255)                                                                                                                                           ggCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCCTGTCCGTAGAGGTCTTCCGGCGGCTCGGAtt  <  1:200510/149‑1 (MQ=255)                                                                                                                                           ggCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCCTGTCCGTAGAGGTCTTCCGGCGGCTCGGAtt  <  1:195817/149‑1 (MQ=255)                                                                                                                                           ggCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCCTGTCCGTAGAGGTCTTCCGGCGGCTCGGAtt  >  2:195817/1‑149 (MQ=255)                                                                                                                                           ggCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCCTGTCCGTAGAGGTCTTCCGGCGGCTCGGAt   >  2:200510/1‑148 (MQ=255)                                                                                                                                             ccTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCCTGTCCGTagag                      >  6:301403/1‑127 (MQ=255)                                                                                                                                             ccTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCCTGTCCGTagag                      <  5:301403/127‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                           AGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCCTGTCCGTAGAGGTCTTCCGGCGGCTCGGATT  >  NC_002947/4485368‑4485654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.