New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4485477	30 (0.600)	5 (0.100)	5/246	NT	13.8%	coding (653/1302 nt)	PP_3977	hypothetical protein
	?	NC_002947	= 4485516	34 (0.710)					coding (692/1302 nt)	PP_3977	hypothetical protein

ATGAAAATCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCC  >  NC_002947/4485330‑4485623                                                                                                                                                      |                                                                                                                                                   aTGAAAATCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑Ca                                                                                                                                                   <  6:247516/149‑1 (MQ=255)    aaaaTCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACt                                                                                                                                                 >  5:125606/1‑148 (MQ=255)     aaaTCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTg                                                                                                                                                >  6:200569/1‑148 (MQ=255)            gACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAAtt                                                                                                                                        <  4:10588/149‑1 (MQ=255)                     ttCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACtgaagcaggccgagctcct                                                                                                                                 >  2:318393‑M1/1‑130 (MQ=255)                          ggATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGc                                                                                                                          >  2:44258/1‑149 (MQ=255)                                   gcAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑Ctgaagcaggccgagctccttagagctcaattgct                                                                                                                  >  3:305097‑M1/1‑114 (MQ=255)                                     agagCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCtt                                                                                                               <  2:298929/149‑1 (MQ=255)                                       agCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCa                                                                                                             <  2:23920/149‑1 (MQ=255)                                        gCTGCATGGATGACAGTGACAGTAGAAAAACCGAATCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATATCGACTCCGAATACAGGCTATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCa                                                                                                             <  6:130577/148‑1 (MQ=255)                                        gCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCa                                                                                                             <  6:125606/148‑1 (MQ=255)                                         cTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACtgaagcaggccgagctccttagagctcaattgcttcagt                                                                                                             <  1:318393‑M1/149‑40 (MQ=255)                                          tGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAgc                                                                                                           <  8:41944‑M2/148‑3 (MQ=255)                                                gATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑Ctgaagcaggccgagctccttagagctcaattgcttcagtgcaaggat                                                                                                     <  4:305097‑M1/148‑48 (MQ=255)                                                gATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCt                                                                                                     <  2:164692/148‑1 (MQ=255)                                                  tgacagtgacagTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑Ctgaagcaggccgagctccttagagctcaattgcttcagtgcaaggatgaa                                                                                                  <  1:189181‑M1/149‑51 (MQ=255)                                                              tAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTAc                                                                                                   <  7:33457/136‑1 (MQ=255)                                                              tAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTAc                                                                                                   >  8:33457/1‑136 (MQ=255)                                                                          aGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCt                                                                                                                         <  8:200389/102‑1 (MQ=255)                                                                          aGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCt                                                                                                                         >  7:200389/1‑102 (MQ=255)                                                                          aGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTcc                                                                          <  3:65518/149‑1 (MQ=255)                                                                                  cTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGATGCCAGACATAGGGAGATCGTCCCTGAagag                                                                  >  7:206010/1‑149 (MQ=255)                                                                                     gCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCtt                                                                                                               >  2:81906/1‑101 (MQ=255)                                                                                     gCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCtt                                                                                                               <  1:81906/101‑1 (MQ=255)                                                                                          aCTGTCTCTATACGCTTGCGAAATCTCGACTCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCATTTGAGCTCTATGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCGAGACATTGGGAGATCGTCCCTGAAGAGGGGTTc                                                            <  8:206010/147‑1 (MQ=255)                                                                                                    taCGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCaa                                                 <  5:200569/148‑1 (MQ=255)                                                                                                         ttGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGc                                           >  2:230845/1‑149 (MQ=255)                                                                                                         ttGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGc                                           >  5:45626/1‑149 (MQ=255)                                                                                                               aaTCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCgt                                     >  5:213369/1‑149 (MQ=255)                                                                                                                     gACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGa                               <  8:178782/149‑1 (MQ=255)                                                                                                                        gCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGAccc                            <  7:265986/149‑1 (MQ=255)                                                                                                                           gAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGa                          >  2:243092/1‑148 (MQ=255)                                                                                                                                 aGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGAGACCGTGTATGACCCGAAAAAGCt                   >  7:136441/1‑149 (MQ=255)                                                                                                                                  ggCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTc                  <  6:45626/149‑1 (MQ=255)                                                                                                                                   gCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCg                 >  4:233895/1‑149 (MQ=255)                                                                                                                                   gCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCg                 <  1:230845/149‑1 (MQ=255)                                                                                                                                     gATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGACCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCgg                >  8:149225/1‑148 (MQ=255)                                                                                                                                      aTACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGaa              <  1:44258/149‑1 (MQ=255)                                                                                                                                          ttCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAgcaaggatgaagtatcgcctgtattcggcgtcgagattgcgcaagcgtatagcgacagtgaggcgagcgtaggcttcggtttttctactgtcactgtca          <  1:189181‑M2/149‑100 (MQ=255)                                                                                                                                          ttCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTAAATCAGGCGACCTTGTATGACCCGAAAAAGCTATGAatca           >  6:266091/1‑148 (MQ=255)                                                                                                                                             aTCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAgcaaggatgaagtatcgcctgtattcggcgtcgagattgcgcaagcgtatagcgacagtgaggcgagcgtaggcttcggtttttctactgtcactgtcatc        <  4:305097‑M2/148‑102 (MQ=255)                                                                                                                                                cTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTgg    <  7:41944/149‑1 (MQ=255)                                                                                                                                                   g‑‑Ctgaagcaggccgagctccttagagctcaattgcttcagtgcaaggatgaagtatcgcctgtattcggcgtcgagattgcgcaagcgtatagcgacagtgaggcgagcgtaggcttcggtttttctactgtcactgtcatccatgca  <  8:41944‑M1/148‑147 (MQ=255)                                                                                                                                                      |                                                                                                                                                   ATGAAAATCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTG‑‑CACTGAAGCAATTGAGCTCTAAGGAGCTCGGCCTGCTTCAGCAAGGCTACGTTGCCAGACATTGGGAGATCGTCCCTGAAGAGGGGTTCGATGTTCTCAATCAGGCGACCGTGTATGACCCGAAAAAGCTCGGAATCATCGGTGGCC  >  NC_002947/4485330‑4485623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.