New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4880260 =	47 (0.930)	4 (0.080)	4/242	NT	9.5%	coding (870/1341 nt)	PP_4289	membrane protein
	?	NC_002947	4880298 =	32 (0.680)					coding (908/1341 nt)	PP_4289	membrane protein

GGCGGGTGCTTCGGCAGCCTTGGCGGCGTCCTCGGCACGCTGCTCGGCAGCCGTCTTGCCGCCTACCGCAGTTGCCGGCAGCGGCTGGTACTCGATCTTCGCTGCGGCTTGCTCAGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGTAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4880413‑4880260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtaagccCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAGGCCGCTGC  >  NC_002947/4880298‑4880445                                                                                                                                                                                                                                                                                                                GGCGGGTGCTTCGGCAGCCTTGGCGGCGTCCTCGGCACGCTGCTCGGCAGCCGTCTTGCCGCCTACCGCAGTTGCCGGCAGCGGCTGGTACTCGATCTTCGCTGCGGCTTGCTCAGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGT                                                                                                                                                           <  2:53513/149‑1    GGGTGCTTCGGCAGCCTTGGCGGCGTCCTCGGCACGCTGCTCGGCAGCCGTCTTGCCGCCTACCGCAGTTGCCGGCAGCGGCTGGTACTCGATCTTCGCTGCGGCTTGCTCAGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGTAAG                                                                                                                                                        >  4:219310/1‑149                                                                                                                 TCAGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAA                                                     <  3:200078/139‑1                                                                                                                 TCAGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAA                                                     >  4:200078/1‑139                                                                                                                   AGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGC                                                                        <  5:109467/118‑1                                                                                                                   AGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGC                                                                        >  6:109467/1‑118                                                                                                                                                    GTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAGG         <  7:67964/148‑1                                                                                                                                                    GTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAGG         >  8:67964/1‑148                                                                                                                                                         CCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGC                          <  6:252205/126‑1                                                                                                                                                          CCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAGGCCGCTGC  <  5:15006/149‑1                                                                                                                                                                                                                                                                                                                GGCGGGTGCTTCGGCAGCCTTGGCGGCGTCCTCGGCACGCTGCTCGGCAGCCGTCTTGCCGCCTACCGCAGTTGCCGGCAGCGGCTGGTACTCGATCTTCGCTGCGGCTTGCTCAGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGTAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4880413‑4880260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtaagccCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAGGCCGCTGC  >  NC_002947/4880298‑4880445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.