New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4880260 =	47 (0.930)	4 (0.080)	4/242	NT	9.5%	coding (870/1341 nt)	PP_4289	membrane protein
	?	NC_002947	4880298 =	32 (0.680)					coding (908/1341 nt)	PP_4289	membrane protein

GGTATCGCAGTAGCCGCGGTTCTGATCCGCCACTACTTCAACACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAGGCCGCTGC  >  NC_002947/4880153‑4880445                                                                                                                                                  |                                                                                                                                                    ggTATCGCAGTAGCCGCGGTTCTGATCCGCCACTACTTCAACACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGa                                                                                                                                                  <  4:71237/149‑1 (MQ=255)   tATCGCAGTAGCCGCGGTTCTGATCCGCCACTACTTCAACACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGc                                                                                                                                                <  8:90921/149‑1 (MQ=255)           ttggcggcgtcctcggcacgctgctcggcagccgtcttgccgcctaccgcagttgccggcagcggctggtactcgatcttcgctgcggcttgctcagGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGa                                                                                                                                                  >  4:200078‑M1/98‑139 (MQ=255)           ttggcggcgtcctcggcacgctgctcggcagccgtcttgccgcctaccgcagttgccggcagcggctggtactcgatcttcgctgcggcttgctcagGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGa                                                                                                                                                  <  3:200078‑M1/42‑1 (MQ=255)              ccGCGGTTCTGATCCGCCACTACTTCAACACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCg                                                                                                                                     <  4:309938/149‑1 (MQ=255)                   gTTCTGATCCGCCACTACTTCAACACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGAt                                                                                                                                <  2:131009/149‑1 (MQ=255)                         aTCCGCCACTACTTCAACACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGa                                                                                                                             <  5:24191/146‑1 (MQ=255)                          tCCGCCACTACTTCAACACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGa                                                                                                                                                  <  3:158980/124‑1 (MQ=255)                          tCCGCCACTACTTCAACACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGa                                                                                                                                                  >  4:158980/1‑124 (MQ=255)                            cGCCACTACTTCAACACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTAc                                                                                                                         >  7:14157/1‑147 (MQ=255)                              gctgctcggcagccgtcttgccgcctaccgcagttgccggcagcggctggtactcgatcttcgctgcggcttgctcagGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCt                                                                                                                                                    >  6:109467‑M1/79‑118 (MQ=255)                              gctgctcggcagccgtcttgccgcctaccgcagttgccggcagcggctggtactcgatcttcgctgcggcttgctcagGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCt                                                                                                                                                    <  5:109467‑M1/40‑1 (MQ=255)                                   actTCAACACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTg                                                                                                                >  1:151943/1‑149 (MQ=255)                                   actTCAACACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCAGCAGCGAAGATCGAGTACCAGCCGCTg                                                                                                                >  3:178990/1‑149 (MQ=255)                                       cAACACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGcc                                                                                                              <  4:178990/147‑1 (MQ=255)                                       cAACACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCgg                                                                                                            >  2:236377/1‑149 (MQ=255)                                        aaCACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCgg                                                                                                            <  4:64011/148‑1 (MQ=255)                                           acCCGCCACGACAGCAACAAGTACGCCTGGACCCTGACCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGAAAGCCGCAGCGAAGATCGAGTACCATCCGCTGCAGGCAAc                                                                                                        >  6:79387/1‑149 (MQ=255)                                             ccGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTg                                                                                                      <  1:296622/149‑1 (MQ=255)                                             ccGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTg                                                                                                      <  5:332209/149‑1 (MQ=255)                                                           acaaGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAggcggc                                                                                           >  3:219310/1‑146 (MQ=255)                                                               gTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACgg                                                                                    <  2:151943/149‑1 (MQ=255)                                                                tACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGc                                                                                   >  4:102137/1‑149 (MQ=255)                                                                  cGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTg                                                                                 <  3:102445/149‑1 (MQ=255)                                                                     cTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGcc                                                                               >  8:13637/1‑148 (MQ=255)                                                                     cTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCg                                                                              >  2:202365/1‑149 (MQ=255)                                                                              gCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAACCCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAACATCGACTACCAGCCGCTGCCGGCAACTGCGGTAGCCGCCAAGACGCCTGCCGAGCAGCCTg                                                                     >  7:77606/1‑149 (MQ=255)                                                                                ccGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGcc                                                                   <  2:36631/149‑1 (MQ=255)                                                                                 cGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGcc                                                                   >  5:128312/1‑148 (MQ=255)                                                                                 cGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCg                                                                  <  2:317677/149‑1 (MQ=255)                                                                                                    atCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTg                                                <  8:104109/148‑1 (MQ=255)                                                                                                      cTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGcc                                              >  2:176631/1‑148 (MQ=255)                                                                                                      cTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGcc                                              >  5:226124/1‑148 (MQ=255)                                                                                                        tcagggcttacggcaatcggtttcgggccggtaacgtaagccCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCaa                                                     >  4:200078‑M2/43‑139 (MQ=255)                                                                                                        tcagggcttacggcaatcggtttcgggccggtaacgtaagccCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCaa                                                     <  3:200078‑M2/97‑1 (MQ=255)                                                                                                        gCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCg                                             >  3:9947/1‑147 (MQ=255)                                                                                                          agggcttacggcaatcggtttcgggccggtaacgtaagccCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGagcagc                                                                        >  6:109467‑M2/41‑118 (MQ=255)                                                                                                          agggcttacggcaatcggtttcgggccggtaacgtaagccCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGagcagc                                                                        <  5:109467‑M2/78‑1 (MQ=255)                                                                                                              CTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCAccc                                     >  4:219310‑M1/1‑149 (MQ=255)                                                                                                                 ACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACccgcc                                  <  2:53513‑M1/149‑1 (MQ=255)                                                                                                                   gctACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACccgccg                                 >  2:106846/3‑148 (MQ=255)                                                                                                                    ttACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCa                               >  5:112409/1‑149 (MQ=255)                                                                                                                          gCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTgcg                         >  2:203291/1‑149 (MQ=255)                                                                                                                                 aCCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCAc                  <  4:9947/149‑1 (MQ=255)                                                                                                                                    gATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGaa                                           >  8:6281/1‑121 (MQ=255)                                                                                                                                         ccGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGgcccag          >  7:792/1‑149 (MQ=255)                                                                                                                                           gtaagccCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAgg         <  7:67964‑M2/141‑1 (MQ=255)                                                                                                                                           gtaagccCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAgg         >  8:67964‑M2/8‑148 (MQ=255)                                                                                                                                                ccCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTgc                          <  6:252205‑M2/124‑1 (MQ=255)                                                                                                                                                 cCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAGGCCGCTGc  <  5:15006‑M2/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GGTATCGCAGTAGCCGCGGTTCTGATCCGCCACTACTTCAACACCCGCCACGACAGCAACAAGTACGCCTGGACCCTGCCCGTCGGCGCTCTGGCGATGATCTGCCTGGCTTACGTTACCGGCCCGAAACCGATTGCCGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAGGCCGCTGC  >  NC_002947/4880153‑4880445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.