New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4884373	38 (0.750)	4 (0.090)	4/240	NT	8.9%	intergenic (+39/+90)	PP_4293/yedI	hypothetical protein/inner membrane protein
	?	NC_002947	= 4884438	47 (1.000)					intergenic (+104/+25)	PP_4293/yedI	hypothetical protein/inner membrane protein

CAGCTGTACGTGGGTGTGGAGTATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4884218‑4884373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtGAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGT  <  NC_002947/4884438‑4884294                                                                                                                                                                                                                                                                                                               CAGCTGTACGTGGGTGTGGAGTATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATT                                                                                                                                                          >  6:234/1‑149       TACGTGGGTGTGGAGTATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCG                                                                                                                                                      <  1:287760/147‑1                                    GAACAAGTACGGCATCAAGGACCGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCTCCTACCAGGTACCGCGTTT                                                                                                                       >  7:57328/1‑149                                                                     CACTACCGACCAGCACACCATGAGCTGCTTGGTCAAGGGTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCG                                                                                       <  8:57328/148‑1                                                                     CACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGC                                                                                        >  7:16695/1‑147                                                                     CACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTGAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGC                                                                                        <  8:16695/147‑1                                                                                                                                                      CGCGGGTGAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTC      <  8:255226/148‑1                                                                                                                                                       GCGGGTGAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCT     <  4:294312/148‑1                                                                                                                                                         GGGTGAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGT  <  5:17619/149‑1                                                                                                                                                         GGGTGAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGT  <  8:74383/149‑1                                                                                                                                                                                                                                                                                                               CAGCTGTACGTGGGTGTGGAGTATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4884218‑4884373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtGAACCCGCTCCTACCAGGTACCGCGTTTGCCTTGAACCCGGCGCGTCCCCTGTAGGAGCGGGTTTACCCGCGAATGGGCCGCAAAGCGGCCCCGCTAACTCAGGTCAGAAGTGAACCTTGACCAAGAAGCTCATGGTGTTCTGGT  <  NC_002947/4884438‑4884294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.