New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4884373	38 (0.750)	4 (0.090)	4/240	NT	8.9%	intergenic (+39/+90)	PP_4293/yedI	hypothetical protein/inner membrane protein
	?	NC_002947	= 4884438	47 (1.000)					intergenic (+104/+25)	PP_4293/yedI	hypothetical protein/inner membrane protein

GGGTGTGGAGTATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCC  >  NC_002947/4884229‑4884517                                                                                                                                                 |                                                                                                                                                  gggTGTGGAGTATGACTACTGGAAGAACAAGTACGGCACCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAAc                                                                                                                                               >  4:192624/1‑149 (MQ=255)  ggTGTGGAGTATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAAcc                                                                                                                                              >  3:90083/1‑149 (MQ=255)      tgGAGTATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGc                                                                                                                                           <  4:90083/148‑1 (MQ=255)        gAGTATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTc                                                                                                                                         <  7:92888/148‑1 (MQ=255)           tATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTa                                                                                                                                      >  2:17954/1‑148 (MQ=255)               actactGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAggg                                                                                                                                 >  2:52058/1‑149 (MQ=255)                         gaaCAAGTACGGCATCAAGGACCGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTgaacccgctcctaccaggtaccgcgttt                                                                                                                       >  7:57328‑M1/1‑121 (MQ=255)                           aCAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCggg                                                                                                                      <  4:236849/148‑1 (MQ=255)                            cAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGtt                                                                                                                    >  7:211303/1‑149 (MQ=255)                             aaGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCggggt                                                                                                                    >  4:76603/1‑146 (MQ=255)                                  cGGCATCAAGGACAGCGATGCCTTCACTACCGACCATAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAg                                                                                                               <  5:217979/147‑1 (MQ=255)                                  cGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAgg                                                                                                              <  8:52809/148‑1 (MQ=255)                                  cGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAgg                                                                                                              <  2:295546/148‑1 (MQ=255)                                       tCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAAcg                                                                                                        <  8:211303/149‑1 (MQ=255)                                            gACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTa                                                                                                   <  4:216305/149‑1 (MQ=255)                                              ctgCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTAcc                                                                                                 <  1:290233/147‑1 (MQ=255)                                                    tGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGc                                                                                                             <  1:21462/131‑1 (MQ=255)                                                    tGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGc                                                                                                             >  2:21462/1‑131 (MQ=255)                                                         tCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCg                                                                                      >  3:150860/1‑149 (MQ=255)                                                          cACTACCGACCAGCACACCATGAGCTGCTTGGTCAAGGGTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTgaacccgctcctaccaggtaccgcgtttgccttgaacccggcgcgtcccctgtaggagcg                                                                                       <  8:57328‑M1/148‑61 (MQ=255)                                                          cACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTgaacccgctcctaccaggtaccgcgtttgccttgaacccggcgcgtcccctgtaggagc                                                                                        >  7:16695‑M1/1‑88 (MQ=255)                                                          cACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTgaacccgctcctaccaggtaccgcgtttgccttgaacccggcgcgtcccctgtaggagc                                                                                        <  8:16695‑M1/147‑60 (MQ=255)                                                           aCTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGATGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCggg                                                                                    <  1:52058/149‑1 (MQ=255)                                                           aCTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAg                                                                                                               <  6:224352/122‑1 (MQ=255)                                                           aCTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACATCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAg                                                                                                               >  5:224352/1‑122 (MQ=255)                                                                  aCCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCaccc                                                                             <  5:17619‑M2/149‑5 (MQ=255)                                                                  aCCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCaccc                                                                             <  8:74383‑M2/149‑5 (MQ=255)                                                                     aGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCacccgc                                                                           <  4:294312‑M2/148‑7 (MQ=255)                                                                      gAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCacccgcg                                                                          <  8:255226‑M2/148‑8 (MQ=255)                                                                           ccATGAGCTTCGTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCgg                                                                    <  3:216744/149‑1 (MQ=255)                                                                            cATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCggg                                                                   <  7:255226/149‑1 (MQ=255)                                                                            cATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCggg                                                                   >  5:82258/1‑149 (MQ=255)                                                                              tGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGc                                                                 <  2:117908/149‑1 (MQ=255)                                                                               taGCTTCTTGGTCAAGGTTCACTTCTGTCCTGAGTTTGCGGTGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGc                                                                 <  1:75573/148‑1 (MQ=39)                                                                                 gCTTCTTGGTCAAGGTTCACTTCTGCCCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCaaa                                                              <  3:192624/149‑1 (MQ=255)                                                                                            aaGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAAtt                                                   <  3:76603/149‑1 (MQ=255)                                                                                             aGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTg                                                  <  6:17619/149‑1 (MQ=255)                                                                                               gTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTggc                                                <  7:228267/149‑1 (MQ=255)                                                                                                  cACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTggccg                                              <  6:82258/148‑1 (MQ=255)                                                                                                     ttCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCGATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTggccggcc                                           >  1:48344/1‑148 (MQ=255)                                                                                                     ttCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGATCACCCGCGAACCGGGGCAAAGCGCCTCAATTggccggcc                                           >  1:116882/1‑148 (MQ=255)                                                                                                                 gcgaatgggCCGCAAAGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTggccg                                              >  6:165298/7‑133 (MQ=38)                                                                                                                 gcgaatgggCCGCAAAGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTggccg                                              <  5:165298/127‑1 (MQ=38)                                                                                                                   gaatgggCCGCAAAGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCcac                             >  3:107934/5‑148 (MQ=255)                                                                                                                                   ggCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCt            <  7:74383/149‑1 (MQ=255)                                                                                                                                    gCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCtt           <  2:48344/149‑1 (MQ=255)                                                                                                                                        aTTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAAccgcccgc                                <  7:250603/124‑1 (MQ=255)                                                                                                                                        aTTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAAccgcccgc                                >  8:250603/1‑124 (MQ=255)                                                                                                                                           cgcgGGTgaacccgctcctaccaggtaccgcgtttgccttgaacccggcgcgtcccctgtaggagcgggtttacccgcgaatgggccgcaaagcggccccgctaactcaggtcagaagtgaaccttgaccaagaagctcatggtgttc      <  8:255226‑M1/148‑142 (MQ=255)                                                                                                                                            gcgGGTgaacccgctcctaccaggtaccgcgtttgccttgaacccggcgcgtcccctgtaggagcgggtttacccgcgaatgggccgcaaagcggccccgctaactcaggtcagaagtgaaccttgaccaagaagctcatggtgttct     <  4:294312‑M1/148‑143 (MQ=255)                                                                                                                                             ctggTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGcc  <  4:150860/147‑1 (MQ=255)                                                                                                                                              gggTgaacccgctcctaccaggtaccgcgtttgccttgaacccggcgcgtcccctgtaggagcgggtttacccgcgaatgggccgcaaagcggccccgctaactcaggtcagaagtgaaccttgaccaagaagctcatggtgttctggt  <  8:74383‑M1/149‑146 (MQ=255)                                                                                                                                              gggTgaacccgctcctaccaggtaccgcgtttgccttgaacccggcgcgtcccctgtaggagcgggtttacccgcgaatgggccgcaaagcggccccgctaactcaggtcagaagtgaaccttgaccaagaagctcatggtgttctggt  <  5:17619‑M1/149‑146 (MQ=255)                                                                                                                                              gggTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGc   >  3:310145/1‑147 (MQ=255)                                                                                                                                                 |                                                                                                                                                  GGGTGTGGAGTATGACTACTGGAAGAACAAGTACGGCATCAAGGACAGCGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCC  >  NC_002947/4884229‑4884517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.