New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4884373 | 38 (0.750) | 4 (0.090) | 4/240 | NT | 8.9% | intergenic (+39/+90) | PP_4293/yedI | hypothetical protein/inner membrane protein |
? | NC_002947 | = 4884438 | 47 (1.000) | intergenic (+104/+25) | PP_4293/yedI | hypothetical protein/inner membrane protein |
ACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGTTGAGCAACGCACTGGTCAGCGCCCCACCACG > NC_002947/4884294‑4884585 | aCCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCaccc < 8:74383‑M2/149‑5 (MQ=255) aCCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCaccc < 5:17619‑M2/149‑5 (MQ=255) aGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCacccgc < 4:294312‑M2/148‑7 (MQ=255) gAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCacccgcg < 8:255226‑M2/148‑8 (MQ=255) ccATGAGCTTCGTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCgg < 3:216744/149‑1 (MQ=255) cATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCggg > 5:82258/1‑149 (MQ=255) cATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCggg < 7:255226/149‑1 (MQ=255) tGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGc < 2:117908/149‑1 (MQ=255) taGCTTCTTGGTCAAGGTTCACTTCTGTCCTGAGTTTGCGGTGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGc < 1:75573/148‑1 (MQ=39) gCTTCTTGGTCAAGGTTCACTTCTGCCCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCaaa < 3:192624/149‑1 (MQ=255) aaGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAAtt < 3:76603/149‑1 (MQ=255) aGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTg < 6:17619/149‑1 (MQ=255) gTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTggc < 7:228267/149‑1 (MQ=255) cACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTggccg < 6:82258/148‑1 (MQ=255) ttCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCGATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTggccggcc > 1:48344/1‑148 (MQ=255) ttCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGATCACCCGCGAACCGGGGCAAAGCGCCTCAATTggccggcc > 1:116882/1‑148 (MQ=255) gcgaatgggCCGCAAAGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTggccg < 5:165298/127‑1 (MQ=38) gcgaatgggCCGCAAAGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTggccg > 6:165298/7‑133 (MQ=38) gaatgggCCGCAAAGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCcac > 3:107934/5‑148 (MQ=255) ggCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCt < 7:74383/149‑1 (MQ=255) gCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCtt < 2:48344/149‑1 (MQ=255) aTTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAAccgcccgc > 8:250603/1‑124 (MQ=255) aTTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAAccgcccgc < 7:250603/124‑1 (MQ=255) ctggTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGcc < 4:150860/147‑1 (MQ=255) gggTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGc > 3:310145/1‑147 (MQ=255) aaaCCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGACCCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGcac > 7:287507/1‑149 (MQ=255) cccGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGcacca > 7:267059/1‑148 (MQ=255) ccGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGcacca > 7:223140/1‑147 (MQ=255) ccGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGcacca < 8:223140/147‑1 (MQ=255) cGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCacccgcgaatgggccgcaaagcggccccgctaactcaggtcagaagtgacccttgaccaagcagctcatggtgtgctggtcggtagtg < 8:57328‑M2/148‑89 (MQ=255) gCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCacccgcgaatgggccgcaaagcggccccgctaactcaggtcagaagtgaaccttgaccaagaagctcatggtgttctggtcggtagtg < 8:16695‑M2/147‑89 (MQ=255) gCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCacccgcgaatgggccgcaaagcggccccgctaactcaggtcagaagtgaaccttgaccaagaagctcatggtgttctggtcggtagtg > 7:16695‑M2/1‑59 (MQ=255) cTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCAc < 8:267059/147‑1 (MQ=255) cTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCt > 7:40292/1‑149 (MQ=255) tACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCtt < 8:55641/124‑1 (MQ=255) tACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCtt > 7:55641/1‑124 (MQ=255) aCAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGCTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGc > 3:193739/1‑149 (MQ=255) aGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGa < 7:23170/149‑1 (MQ=255) ggggACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAg < 1:17954/149‑1 (MQ=255) gcgcCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTcc > 6:170682/1‑149 (MQ=255) cGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGAcc > 8:84382/1‑149 (MQ=255) tt‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCa > 6:60395/1‑116 (MQ=255) tt‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCa < 5:60395/116‑1 (MQ=255) aaGGCAAAGGCGGTACCTGGTATGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCATTTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCAACGCCATCACCACAGCACCTGCGAGGACTCCGACCccgccg < 2:116882/148‑1 (MQ=255) aGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGtt > 1:208975/1‑149 (MQ=255) aGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGtt < 8:40292/149‑1 (MQ=255) ggCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGtt > 3:165966/1‑148 (MQ=255) ggCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGtt > 2:18192/1‑148 (MQ=255) gCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACcaca < 3:294788/118‑1 (MQ=255) gCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACcaca > 4:294788/1‑118 (MQ=255) gCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGTTGa < 7:84382/149‑1 (MQ=255) aaaCGCGGTACCTGGTAGGAGCGGGTTCacccgcgaatgggccgcaaagcggccccgctaactcaggtcagaagtgaaccttgaccaagaagctcatggtgttctggtcggtagtgaaggcatcgcggtccttgatgccgtacttgttc > 7:57328‑M2/1‑28 (MQ=255) aaaCGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCCCCGCCAGCCCCACAGCACCTGCGAGGACTCCGACCCCGCCGTTGAg > 4:41251/1‑148 (MQ=255) aaaCGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGTTGAg > 1:53749/1‑148 (MQ=255) cgcgGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGTTGAGCAAc < 3:294312/149‑1 (MQ=255) aCCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCTGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCAc > 1:85053/1‑111 (MQ=255) aCCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCAc < 2:85053/111‑1 (MQ=255) gTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGTTGAGCAACGCACTGGTCAg < 5:234/149‑1 (MQ=255) gTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGTTGAGCAACGCACTGGTCAGCGCCccacca < 8:287507/149‑1 (MQ=255) cACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGTTGAGCAACGCACTGGTCAGCGCCCCACCACg < 4:165966/148‑1 (MQ=255) | ACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTT‑CAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGTTGAGCAACGCACTGGTCAGCGCCCCACCACG > NC_002947/4884294‑4884585 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |