New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4904206 =	55 (1.090)	3 (0.060)	3/242	NT	5.8%	coding (628/663 nt)	PP_4312	hypothetical protein
	?	NC_002947	4904254 =	46 (0.970)					coding (580/663 nt)	PP_4312	hypothetical protein

TGACCTGGCGCGATGGCAAAGCCAGCCTGCTGAGCCGCAATGTGCGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4904256‑4904206 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccaggTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCCGTGGGACCAGGCCGTGTAGATGGTCGCATTG  >  NC_002947/4904254‑4904399                                                                                                                                                                                                       TGACCTGGCGCGATGGCAAAGCCAGCCTGCTGAGCCGCAATGTGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGAT                                                   >  1:19101/1‑148       GGCGCGATGGCAAAGCCAGCCTGCTGAGCCGCAATGTGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCC                                            >  7:246911/1‑149                      CCAGCCTGCTGAGCCGCAATGTGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCCGTGG                             <  2:19101/149‑1                                                 AGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCTGTGGGACCAGGCCGTGTAGATGGTCGCATTG  >  2:221948/1‑149                                                                                                                                                                                                       TGACCTGGCGCGATGGCAAAGCCAGCCTGCTGAGCCGCAATGTGCGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4904256‑4904206 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccaggTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCCGTGGGACCAGGCCGTGTAGATGGTCGCATTG  >  NC_002947/4904254‑4904399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.