New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4904206 = | 55 (1.090) | 3 (0.060) | 3/242 | NT | 5.8% | coding (628/663 nt) | PP_4312 | hypothetical protein |
? | NC_002947 | 4904254 = | 46 (0.970) | coding (580/663 nt) | PP_4312 | hypothetical protein |
AACCAGCGCGTAAGCCGTCGCCAGGCCCACCACTCCACCACCGATCACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTT > NC_002947/4904061‑4904347 | caatgcgaccatctacacggcctggtcccacagctacctgccggaactgatcaacaccgtggccggcaaggccctgggggaggagcgggtgatcaccgaggactggagcggcgaagacttcgacaccctctacgtattgaccctgaCCt > 2:221948‑M1/147‑149 (MQ=255) aGCGCGTAAGCCGTCGCCAGGCCCACCACTCCACCACCGATCACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGgcgc < 3:33661/149‑1 (MQ=255) aGCGCGTAAGCCGTCGCCAGGCCCACCACTCCACCACCGATAACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGACAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGgcgc > 1:318574/1‑149 (MQ=255) ccGTCGCCAGGCCCACCACTCCACCACCGATCACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTg > 4:101676/1‑145 (MQ=255) ccGTCGCCAGGCCCACCACTCCACCACCGATCACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTg < 3:101676/145‑1 (MQ=255) cGTCGCCAGGCCCACCACTCCACCACCGATCACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCt > 7:301652/1‑149 (MQ=255) cGTCGCCAGGCCCACCACTCCACCACCGATCACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCt > 5:147724/1‑149 (MQ=255) tCGCCAGGCCCACCACTCCACCACCGATCACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCCGGCGCACATTGCGGCTca < 7:231251/149‑1 (MQ=255) tccAGGCCCACCACTCCACCACCGATCACCGTTACCCGCTGCTTCATAGCTCATCCCTGTACAGCCTTCCTAGCCAAACAGTACCAGC‑GTATCAGCTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGCCGCACATTGCGGCTcag > 4:65279/2‑148 (MQ=255) ccaccaCTCCACCACCGATCACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAggctgg > 1:198222/1‑149 (MQ=255) ccacggctacctgccggaactgatcaacaccgtggccggcaaggccctgggggaggagcgggtgatcaccgaggactggagcggcgaagacttcgacaccctctacgtattgaccctgaCCTGGCGCACATTGCGGCTCAGCAggctgg < 2:19101‑M1/30‑1 (MQ=255) accacTCCACCACCGATCACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAgg < 4:241775/143‑1 (MQ=255) accacTCCACCACCGATCACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAgg > 3:241775/1‑143 (MQ=255) caccacCGATCACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGcc < 5:179558/147‑1 (MQ=255) caccGATCACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATcgc > 1:170223/1‑149 (MQ=255) ggaactgatcaacaccgtggccggcaaggccctgggggaggagcgggtgatcaccgaggactggagcggcgaagacttcgacaccctctacgtattgaccctgaCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGcc > 7:246911‑M1/105‑149 (MQ=255) aCCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGt > 2:158783/1‑148 (MQ=255) aCCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTc < 8:301652/149‑1 (MQ=255) atcaacaccgtggccggcaaggccctgggggaggagcgggtgatcaccgaggactggagcggcgaagacttcgacaccctctacgtattgaccctgaCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCa > 1:19101‑M1/98‑148 (MQ=255) ttACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAggg < 2:198222/149‑1 (MQ=255) gctgctTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATa < 3:20376/149‑1 (MQ=255) ctgctTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGCGGGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATa > 1:241435/1‑149 (MQ=255) ctTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTa > 5:170301/1‑149 (MQ=255) ctTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTa < 2:170223/149‑1 (MQ=255) ttCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACg > 2:109174/1‑146 (MQ=255) tCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAggg < 5:320661/149‑1 (MQ=255) cGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAggct > 7:247304/1‑107 (MQ=255) cGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAggct < 8:247304/107‑1 (MQ=255) gCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTAAGGGTCAATACGTAGAGGgtg > 7:250684/1‑149 (MQ=255) cTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGgtgt < 2:241435/149‑1 (MQ=255) aTCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCg < 6:147724/148‑1 (MQ=255) cccTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCCGCAGGCTGGCTTTGCCAGCGCGCCAGGGCAGGGTCCATACGTAGAGGGTGTCGagg > 2:188341/1‑147 (MQ=255) cccTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCaa > 8:108187/1‑130 (MQ=255) cccTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCaa < 7:108187/130‑1 (MQ=255) cTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAg > 7:43467/1‑122 (MQ=255) cTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAg < 8:43467/122‑1 (MQ=255) cTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGc > 7:266610/1‑76 (MQ=255) cTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGc < 8:266610/76‑1 (MQ=255) aaaCAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCg > 3:17658/1‑149 (MQ=255) aaCAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCgg < 5:289470/149‑1 (MQ=255) tACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCgg > 6:106525/1‑144 (MQ=255) tACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCgg < 5:106525/144‑1 (MQ=255) aCCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATc < 3:65279/148‑1 (MQ=255) ccAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCAc > 6:242528/1‑149 (MQ=255) gC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCg > 3:96972/1‑149 (MQ=255) gC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCg < 6:170301/149‑1 (MQ=255) aTCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGctcc > 5:70502/1‑149 (MQ=255) aTCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGctcc < 4:17658/149‑1 (MQ=255) ggTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTc > 6:224240/1‑121 (MQ=255) ggTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTccc > 2:223071/1‑149 (MQ=255) ggTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTGTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTc < 5:224240/121‑1 (MQ=255) gTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTcccc > 8:116175/1‑149 (MQ=255) cTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCtt > 4:7931/1‑149 (MQ=255) tATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCtcctcc < 7:143070/137‑1 (MQ=255) tATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCtcctcc > 8:143070/1‑137 (MQ=255) gcgcACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCg > 5:80500/1‑149 (MQ=255) cGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACg < 3:7931/149‑1 (MQ=255) gTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCATGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACgg < 8:250684/149‑1 (MQ=255) ttCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGtt < 6:80500/149‑1 (MQ=255) | AACCAGCGCGTAAGCCGTCGCCAGGCCCACCACTCCACCACCGATCACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTT > NC_002947/4904061‑4904347 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |