New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4904206 =	55 (1.090)	3 (0.060)	3/242	NT	5.8%	coding (628/663 nt)	PP_4312	hypothetical protein
	?	NC_002947	4904254 =	46 (0.970)					coding (580/663 nt)	PP_4312	hypothetical protein

ACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCCGTGGGACCAGGCCGTGTAGATGGTCGCATTG  >  NC_002947/4904107‑4904399                                                                                                                                                     |                                                                                                                                                  aCCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGt                                                                                                                                                   >  2:158783/1‑148 (MQ=255) aCCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTc                                                                                                                                                  <  8:301652/149‑1 (MQ=255)    atcaacaccgtggccggcaaggccctgggggaggagcgggtgatcaccgaggactggagcggcgaagacttcgacaccctctacgtattgaccctgaCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCa                                                                                                                                                 >  1:19101‑M1/98‑148 (MQ=255)     ttACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAggg                                                                                                                                              <  2:198222/149‑1 (MQ=255)           gctgctTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATa                                                                                                                                        <  3:20376/149‑1 (MQ=255)            ctgctTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGCGGGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATa                                                                                                                                        >  1:241435/1‑149 (MQ=255)               ctTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTa                                                                                                                                    <  2:170223/149‑1 (MQ=255)               ctTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTa                                                                                                                                    >  5:170301/1‑149 (MQ=255)                ttCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACg                                                                                                                                      >  2:109174/1‑146 (MQ=255)                    tCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAggg                                                                                                                               <  5:320661/149‑1 (MQ=255)                      gCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTAAGGGTCAATACGTAGAGGgtg                                                                                                                             >  7:250684/1‑149 (MQ=255)                       cTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGgtgt                                                                                                                            <  2:241435/149‑1 (MQ=255)                          aTCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCg                                                                                                                          <  6:147724/148‑1 (MQ=255)                            cccTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCCGCAGGCTGGCTTTGCCAGCGCGCCAGGGCAGGGTCCATACGTAGAGGGTGTCGagg                                                                                                                       >  2:188341/1‑147 (MQ=255)                            cccTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCaa                                                                                                                                          >  8:108187/1‑130 (MQ=255)                            cccTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCaa                                                                                                                                          <  7:108187/130‑1 (MQ=255)                              cTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAg                                                                                                                                                <  8:43467/122‑1 (MQ=255)                              cTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAg                                                                                                                                                >  7:43467/1‑122 (MQ=255)                                                 aaaCAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCg                                                                                                  >  3:17658/1‑149 (MQ=255)                                                  aaCAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCgg                                                                                                 <  5:289470/149‑1 (MQ=255)                                                       tACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCgg                                                                                                 >  6:106525/1‑144 (MQ=255)                                                       tACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCgg                                                                                                 <  5:106525/144‑1 (MQ=255)                                                        aCCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATc                                                                                            <  3:65279/148‑1 (MQ=255)                                                         ccAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCAc                                                                                          >  6:242528/1‑149 (MQ=255)                                                            gC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCg                                                                                       >  3:96972/1‑149 (MQ=255)                                                            gC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCg                                                                                       <  6:170301/149‑1 (MQ=255)                                                                 aTCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGctcc                                                                                   >  5:70502/1‑149 (MQ=255)                                                                 aTCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGctcc                                                                                   <  4:17658/149‑1 (MQ=255)                                                                     ggTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTc                                                                                                           >  6:224240/1‑121 (MQ=255)                                                                     ggTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTccc                                                                               >  2:223071/1‑149 (MQ=255)                                                                     ggTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTGTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTc                                                                                                           <  5:224240/121‑1 (MQ=255)                                                                      gTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTcccc                                                                              >  8:116175/1‑149 (MQ=255)                                                                               cTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCtt                                                                     >  4:7931/1‑149 (MQ=255)                                                                                tATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCtcctcc                                                                                <  7:143070/137‑1 (MQ=255)                                                                                tATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCtcctcc                                                                                >  8:143070/1‑137 (MQ=255)                                                                                   gcgcACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCg                                                                 >  5:80500/1‑149 (MQ=255)                                                                                         cGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACg                                                           <  3:7931/149‑1 (MQ=255)                                                                                          gTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCATGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACgg                                                          <  8:250684/149‑1 (MQ=255)                                                                                              ttCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGtt                                                      <  6:80500/149‑1 (MQ=255)                                                                                                  tgacctggcgcgatggcaaagccagcctgctgagccgcaatgtgcgccaggTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGAt                                                   >  1:19101‑M2/52‑148 (MQ=255)                                                                                                        ggcgcgatggcaaagccagcctgctgagccgcaatgtgcgccaggTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTcc                                            >  7:246911‑M2/46‑149 (MQ=255)                                                                                                             acaTTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAg                                       <  5:242528/149‑1 (MQ=255)                                                                                                                    ggCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCCg                                >  7:105278/1‑149 (MQ=255)                                                                                                                       ccagcctgctgagccgcaatgtgcgccaggTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCCGTgg                             <  2:19101‑M2/119‑1 (MQ=255)                                                                                                                        cagcagGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCCGTggg                            >  5:91400/1‑149 (MQ=255)                                                                                                                         agcagGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCCGTgg                             <  8:105278/147‑1 (MQ=255)                                                                                                                         agcagGCTGGCGTTGCCATCGCGCCAGGGCAGGGTCACTACGTAGCGGGGTGCGCCGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCTCTCCTCCCCCAGGGCCTGGCCGGCCACGGGGTTGATCAGTTCCGGCAGGTAGCCGTgg                             <  1:188341/147‑1 (MQ=255)                                                                                                                            agGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCTAGTCCTCGGTGATCACCAGCTCCTCCCCCAGGGCAGTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGGCGTGGGAc                          >  8:139194/1‑147 (MQ=255)                                                                                                                             ggctggctTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCCGTGGGACCAg                       <  6:91400/149‑1 (MQ=255)                                                                                                                                  gctTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCCGTGGGACCAGGcc                    <  6:70502/147‑1 (MQ=255)                                                                                                                                    tttGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCg                                           >  4:64045/1‑122 (MQ=255)                                                                                                                                    tttGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCg                                           <  3:64045/122‑1 (MQ=255)                                                                                                                                    tttGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCCGTGGGACCAGGCCg                   <  4:309261/146‑1 (MQ=255)                                                                                                                                    tttGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCCGTGGGACCAGGCCg                   >  3:309261/1‑146 (MQ=255)                                                                                                                                         cATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCCGTGGGACCAGGCCGTGTAGATg           >  7:97099/1‑149 (MQ=255)                                                                                                                                                  aggTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCTGTGGGACCAGGCCGTGTAGATGGTCGCATTg  >  2:221948‑M2/4‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  ACCGTTACCCGCTGCTTCATCGCTCATCCCTGTTCCGGCTTCCTTGCCAAACAGTACCAGC‑GGATCAGGTCGGGCAGCTATGCGCACCGTCATTCAGGCCCTGGCGCACATTGCGGCTCAGCAGGCTGGCTTTGCCATCGCGCCAGGTCAGGGTCAATACGTAGAGGGTGTCGAAGTCTTCGCCGCTCCAGTCCTCGGTGATCACCCGCTCCTCCCCCAGGGCCTTGCCGGCCACGGTGTTGATCAGTTCCGGCAGGTAGCCGTGGGACCAGGCCGTGTAGATGGTCGCATTG  >  NC_002947/4904107‑4904399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.