New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5334516 =	52 (1.030)	4 (0.080)	4/242	NT	7.2%	coding (946/2976 nt)	PP_4695	two‑component system sensor histidine kinase
	?	NC_002947	5334561 =	54 (1.140)					coding (991/2976 nt)	PP_4695	two‑component system sensor histidine kinase

GTAGATGTTGCCCTCGGCCGGCGGCTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5334671‑5334516 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggcggcCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAAGTGGACCCGCCGTGCACTGATCGTC  >  NC_002947/5334561‑5334707                                                                                                                                                                                                                                                                                                                 GTAGATGTTGCCCTCGGCCGGCGGCTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGT                                                                                                                                                            <  3:184085/149‑1      TGTTGCCCTCGGCCGGCGGCTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGC                                                                                                                                                        >  3:31965/1‑148      TGTTGCCCTCGGCCGGCGGCTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGC                                                                                                                                                        <  4:31965/148‑1      TGTTGCCCTCGGCCGGCGGCTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGG                                                                                                                                                         >  7:27561/1‑147      TGTTGCCCTCGGCCGGCGGCTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGG                                                                                                                                                         <  8:27561/147‑1       GTTGCCCTCGGCCGGCGGCTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGCGG                                                                                                                                                      >  5:139633/1‑149        TTGCCCTCGGCCGGCGGCTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGCGGC                                                                                                                                                     <  2:172669/149‑1                                              GTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGCGGC                                                                                                                                                     <  3:185043/111‑1                                              GTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGCGGC                                                                                                                                                     >  4:185043/1‑111                                                                                                                 CCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAA                                             >  1:300284/1‑148                                                                                                                   GCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACAT                                          <  2:300284/149‑1                                                                                                                        TGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGT                                                                              >  5:47924/1‑108                                                                                                                        TGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGT                                                                              <  6:47924/108‑1                                                                                                                                                       GGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAAGTGGACCCGCCGTGCACTGA       <  5:141031/148‑1                                                                                                                                                          GGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAAGTGGACCCGCCGTGCACTGATCGT   <  5:266392/149‑1                                                                                                                                                           GCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAAGTGGACCCGCCGTGCACTGATCGTC  <  4:72468/149‑1                                                                                                                                                                                                                                                                                                                 GTAGATGTTGCCCTCGGCCGGCGGCTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5334671‑5334516 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggcggcCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAAGTGGACCCGCCGTGCACTGATCGTC  >  NC_002947/5334561‑5334707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.