New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5334516 =	52 (1.030)	4 (0.080)	4/242	NT	7.2%	coding (946/2976 nt)	PP_4695	two‑component system sensor histidine kinase
	?	NC_002947	5334561 =	54 (1.140)					coding (991/2976 nt)	PP_4695	two‑component system sensor histidine kinase

CTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAA  >  NC_002947/5334369‑5334664                                                                                                                                                    |                                                                                                                                                      gacgatcagtgcacggcgggtccacttcagccaacggtagatgttgccctcggccggcggctggtaaagcggcagcaccaggtggttcagggccatgcccgacagcgccagggtggtgacgatgatcaggccgctggctgccgacaggc                                                                                                                                                      <  4:72468‑M1/2‑1 (MQ=255)  acgatcagtgcacggcgggtccacttcagccaacggtagatgttgccctcggccggcggctggtaaagcggcagcaccaggtggttcagggccatgcccgacagcgccagggtggtgacgatgatcaggccgctggctgccgacaggcc                                                                                                                                                     <  5:266392‑M1/3‑1 (MQ=255)    caCCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATcgccgc                                                                                                                                                   <  8:223139/148‑1 (MQ=255)    aaCCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATcgccg                                                                                                                                                    <  4:275755/148‑1 (MQ=255)      tcagtgcacggcgggtccacttcagccaacggtagatgttgccctcggccggcggctggtaaagcggcagcaccaggtggttcagggccatgcccgacagcgccagggtggtgacgatgatcaggccgctggctgccgacaggccgcc                                                                                                                                                  <  5:141031‑M1/6‑1 (MQ=255)           gctcgctGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCaacaac                                                                                                                                            <  6:304530/149‑1 (MQ=255)            ctcgctGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAAcc                                                                                                                                           <  8:191333/149‑1 (MQ=255)               gctGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGTCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCa                                                                                                                                          <  4:216148/147‑1 (MQ=255)               gctGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAg                                                                                                                                         <  5:89430/148‑1 (MQ=255)               gctGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAg                                                                                                                                         <  1:260621/148‑1 (MQ=255)                   gTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCAtt                                                                                                                                    <  8:242679/149‑1 (MQ=255)                      aGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTgg                                                                                                                                  >  8:125570/1‑148 (MQ=255)                         gcCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCAct                                                                                                                              >  7:121904/1‑149 (MQ=255)                                   gCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTa                                                                                                                     >  5:307919/1‑148 (MQ=255)                                       gCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCAAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTg                                                                                                               <  8:121904/149‑1 (MQ=255)                                         atgttgccctcggccggcggctggtaaagcggcagcaccaggtggttcagggccatgcccgacagcgccagggtggtgacgatgatcaggccgctggctgccgacagGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTggc                                                                                                             <  2:300284‑M1/42‑1 (MQ=255)                                            ttgccctcggccggcggctggtaaagcggcagcaccaggtggttcagggccatgcccgacagcgccagggtggtgacgatgatcaggccgctggctgccgacagGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTggcgg                                                                                                           >  1:300284‑M1/105‑148 (MQ=255)                                              ttCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCt                                                                                                        <  2:17064/149‑1 (MQ=255)                                                    ctgctgATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCgg                                                                                                   >  2:18097/1‑148 (MQ=255)                                                     tgctgATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCGGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGca                                                                                                 <  5:272688/149‑1 (MQ=255)                                                          atgaGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGcagccag                                                                                            >  4:312201/1‑149 (MQ=255)                                                              gCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGc                                                                                        >  7:163729/1‑149 (MQ=255)                                                                cTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCt                                                                                      <  5:36531/149‑1 (MQ=255)                                                                      gtgccgCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGatcat                                                                                >  6:266392/1‑149 (MQ=255)                                                                        gccgCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCg                                                                              >  7:161680/1‑149 (MQ=255)                                                                            cTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCActgc                                                                                                                            >  3:56795/1‑100 (MQ=255)                                                                            cTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCActgc                                                                                                                            <  4:56795/100‑1 (MQ=255)                                                                             accaggtggttcagggccatgcccgacagcgccagggtggtgacgatgatcaggccgctggctgccgacagGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑a                                                                                                                  <  6:47924‑M1/37‑1 (MQ=255)                                                                             accaggtggttcagggccatgcccgacagcgccagggtggtgacgatgatcaggccgctggctgccgacagGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑a                                                                                                                  >  5:47924‑M1/72‑108 (MQ=255)                                                                                tGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCaccacc                                                                      <  1:128707/149‑1 (MQ=255)                                                                                 gCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCAccc                                                                     >  3:303004/1‑149 (MQ=255)                                                                                    gtgGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTgg                                                                  >  4:242521/1‑149 (MQ=255)                                                                                       ggccggccTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGc                                                                                                                                 <  8:94195/84‑1 (MQ=255)                                                                                       ggccggccTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGc                                                                                                                                 >  7:94195/1‑84 (MQ=255)                                                                                          cggccTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGAATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGt                                                            >  8:272558/1‑149 (MQ=255)                                                                                               tGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCggg                                                        >  4:140131/1‑148 (MQ=255)                                                                                                       ggCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGccc                                                <  3:242521/148‑1 (MQ=255)                                                                                                         cgcCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGa                                             <  7:157255/149‑1 (MQ=255)                                                                                                         cgcCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGa                                             <  3:312201/149‑1 (MQ=255)                                                                                                           ccAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑TTTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAac                                           <  1:100989/149‑1 (MQ=255)                                                                                                           ccAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAac                                           >  2:100989/1‑149 (MQ=255)                                                                                                            cAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAACCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAacc                                          >  4:136359/1‑149 (MQ=255)                                                                                                                aCCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGTATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCt                                      <  7:272558/149‑1 (MQ=255)                                                                                                                 ccAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTg                                     >  6:139633/1‑149 (MQ=255)                                                                                                                  cAACCCCGAGTACTTCACCCTGGGCCTGGGGATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTgg                                    >  1:27985/1‑149 (MQ=255)                                                                                                                  cAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTc                                                           <  5:26250/126‑1 (MQ=255)                                                                                                                  cAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTc                                                           >  6:26250/1‑126 (MQ=255)                                                                                                                  cAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTgg                                    >  5:252177/1‑149 (MQ=255)                                                                                                                  cAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTgg                                    >  4:44569/1‑149 (MQ=255)                                                                                                                     ccccGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGatc                                                                                  >  6:155817/1‑100 (MQ=255)                                                                                                                     ccccGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGatc                                                                                  <  5:155817/100‑1 (MQ=255)                                                                                                                        cGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGtgctgc                              <  8:161680/149‑1 (MQ=255)                                                                                                                         gAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGcc                             >  2:38559/1‑149 (MQ=255)                                                                                                                                 cACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTAc                      <  7:125570/148‑1 (MQ=255)                                                                                                                                  aCCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTAcc                     <  1:38559/148‑1 (MQ=255)                                                                                                                                   cccTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCTCTGAACCACCTGGTGCTGCCGCTTTACCAg                   <  8:163729/149‑1 (MQ=255)                                                                                                                                     ctgggcctgggcATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACAATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGACCCACCTGGTGCTGCCGCTTTACCAgc                  >  1:80442/1‑149 (MQ=255)                                                                                                                                       gggcctgggcATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAgccgc               >  6:263393/1‑149 (MQ=255)                                                                                                                                           ctgggcATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCgccggc           >  6:141031/1‑149 (MQ=255)                                                                                                                                             gggcATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCgccggcc          >  6:12420/1‑148 (MQ=255)                                                                                                                                             gggcATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCgccggcc          >  2:157169/1‑148 (MQ=255)                                                                                                                                                  tCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAgg      >  5:104312/1‑147 (MQ=255)                                                                                                                                                  tCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAgg      <  6:104312/147‑1 (MQ=255)                                                                                                                                                    GCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAaccac                                        <  3:185043‑M1/111‑1 (MQ=255)                                                                                                                                                    GCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAaccac                                        >  4:185043‑M1/1‑111 (MQ=255)                                                                                                                                                    GCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCaa  <  2:172669‑M1/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CTCAACCCGCGCTCGCTGGTCAGCGCCAGCTGGGGCCTGCCGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTAC‑ATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAA  >  NC_002947/5334369‑5334664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.