New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5480390 =	46 (0.910)	4 (0.080)	3/244	NT	8.1%	coding (914/993 nt)	prmA	ribosomal protein L11 methyltransferase
	?	NC_002947	5480474 =	47 (0.990)					intergenic (+5/‑38)	prmA/PP_4819	ribosomal protein L11 methyltransferase/hypothetical protein

GCGGGCACTGGGTGACGAAACTGTCGGTCATGCGGCGATCCGGGAGCTGTGCAGAAAAGTATTCTAGGCCCGCTTAGCGACGCCGACCACTGATGCGCACCCAGCCGTCGCGCACGACGATCGGGTCCAGTTCAAAGTCGGCGGCATAAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5480542‑5480390 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagcggGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTG  >  NC_002947/5480474‑5480593                                                                                                                                                                                                                                                                                   GCGGGCACTGGGTGACGAAACTGTCGGTCATGCGGCGATCCGGGAGCTGTGCAGAAAAGTATTCTAGGCCCGCTTAGCGACGCCGACCACTGATGCGCACCCAGCCGTCGCGCACGACGATCGGGTCCAGTTCAAAGTCGGCGGCAT                                                                                                                                >  6:165768/1‑147   GGGCACTGGGTGACGAAACTGTCGGTCATGCGGCGATCCGGGAGCTGTGCAGAAAAGTATTCTAGGCCCGCTTAGCGACGCCGACCACTGATGCGCACCCAGCCGTCGCGCACGACGATCGGGTCCAGTTCAAAGTCGGCGGCATAAGC                                                                                                                            >  6:88672/1‑149                                                                     CCCGCTTAGCGACGCCGACCACTGATGCGCACCCAGCCGTCGCGCACGACGATCGGGTCCAGTTCAAAGTCGGCGGCATAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTG                                                          >  5:168962/1‑149                                                                        GCTTAGCGACGCCGACCACTGATGCGCACCCAGCCGTCGCGCACGACGATCGGGTCCAGTTCAAAGTCGGCGGCATAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCC                                                       >  4:91446/1‑149                                                                        GCTTAGCGACGCCGACCACTGATGCGCACCCAGCCGTCGCGCACGACGATCGGGTCCAGTTCAAAGTCGGCGGCATAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCC                                                       >  5:148437/1‑149                                                                               GACGCCGACCACTGATGCGCACCCAGCCGTCGCGCACGACGATCGGGTCCAGTTCAAAGTCGGCGGCATAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGC                                                <  3:91446/149‑1                                                                                                                                                   TAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTG  <  3:274495/127‑1                                                                                                                                                   TAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTG  >  4:274495/1‑127                                                                                                                                                                                                                                                                                   GCGGGCACTGGGTGACGAAACTGTCGGTCATGCGGCGATCCGGGAGCTGTGCAGAAAAGTATTCTAGGCCCGCTTAGCGACGCCGACCACTGATGCGCACCCAGCCGTCGCGCACGACGATCGGGTCCAGTTCAAAGTCGGCGGCATAAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5480542‑5480390 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagcggGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTG  >  NC_002947/5480474‑5480593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.