New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5480390 =	46 (0.910)	4 (0.080)	3/244	NT	8.1%	coding (914/993 nt)	prmA	ribosomal protein L11 methyltransferase
	?	NC_002947	5480474 =	47 (0.990)					intergenic (+5/‑38)	prmA/PP_4819	ribosomal protein L11 methyltransferase/hypothetical protein

GTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCGTGGTGCGCTGCGGTCACTGCCTGCAG  >  NC_002947/5480326‑5480622                                                                                                                                                      |                                                                                                                                                     cactgggtgacgaaactgtcggtcatgcggcgatccgggagctgtgcagaaaagtattctaggcCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCggg                                                                                                                                                      >  5:168962‑M1/65‑149 (MQ=255)     gCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTa                                                                                                                                                  <  3:312336/149‑1 (MQ=255)        cAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGaa                                                                                                                                               <  3:195008/149‑1 (MQ=255)          ggTGGCCTGCTGGCGCTTTCGGGCATCCCCGGCGAGCCAGGGGAAGACCTGGCCGCCGCTTAAGCCCCCGCCTTTGAACTGGACCCCCTCGGCCTGCGCGCCCGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAAt                                                                                                                                              <  1:233020/149‑1 (MQ=255)             ggCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACtt                                                                                                                                          <  4:55739/149‑1 (MQ=255)              gCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACtt                                                                                                                                          <  8:276947/148‑1 (MQ=255)              gCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACtt                                                                                                                                          <  6:35254/148‑1 (MQ=255)                ctgctgGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTc                                                                                                                                       >  5:87103/1‑149 (MQ=255)                   ctgGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCt                                                                                                                                      <  2:211971/147‑1 (MQ=255)                      gcgcTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGcaca                                                                                                                                 <  1:145094/149‑1 (MQ=255)                          tttCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTc                                                                                                                             >  5:81061/1‑149 (MQ=255)                                        gCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCAt                                                                                                               <  6:81061/149‑1 (MQ=255)                                                aGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACa                                                                                                       <  6:87103/149‑1 (MQ=255)                                                     aaGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTc                                                                                                  >  2:156340/1‑149 (MQ=255)                                                     aaGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGAAGCATGACCGACAATTTc                                                                                                  >  6:226801/1‑149 (MQ=255)                                                          gTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCAc                                                                                             <  2:222299/149‑1 (MQ=255)                                                           tGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCAcc                                                                                            <  5:64483/149‑1 (MQ=255)                                                             gccgccGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCa                                                                                          <  4:112331/149‑1 (MQ=255)                                                               cgccgcTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGt                                                                                        <  2:175391/149‑1 (MQ=255)                                                                 cccgcttagcgacgccgaccactgatgcgcacccagccgtcgcgcacgacgatcgggtccagttcaaagtcggcggcataagcggGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTg                                                                                       >  5:168962‑M2/86‑149 (MQ=255)                                                                   GCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGccc                                                                                    >  6:88672‑M1/1‑149 (MQ=255)                                                                    gcttagcgacgccgaccactgatgcgcacccagccgtcgcgcacgacgatcgggtccagttcaaagtcggcggcataagcggGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGccc                                                                                    >  5:148437‑M2/83‑149 (MQ=255)                                                                    gcttagcgacgccgaccactgatgcgcacccagccgtcgcgcacgacgatcgggtccagttcaaagtcggcggcataagcggGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGccc                                                                                    >  4:91446‑M2/83‑149 (MQ=255)                                                                     ttgtGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCg                                                                                   >  8:69881/4‑148 (MQ=255)                                                                       ATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGc                                                                                  >  6:165768‑M1/1‑147 (MQ=255)                                                                        tGCCGCCGACTTTGAACTGGAGCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGTGCTTAGTAGACTTTTCTGCACAGCTCCCTGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCAt                                                                                <  5:226801/148‑1 (MQ=255)                                                                           gacgccgaccactgatgcgcacccagccgtcgcgcacgacgatcgggtccagttcaaagtcggcggcataagcggGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGc                                                                             <  3:91446‑M2/74‑1 (MQ=255)                                                                           cgccgACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCACGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGc                                                                             <  1:275168/148‑1 (MQ=255)                                                                            gccgACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGATTACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGc                                                                             >  4:222755/1‑147 (MQ=255)                                                                                 cTTTTAACTGGACCCTATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTTCTTGTCGCTATTCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCa                                                                      <  1:264902/149‑1 (MQ=255)                                                                                  tttGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACa                                                                                                       <  4:301962/115‑1 (MQ=255)                                                                                  tttGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACa                                                                                                       >  3:301962/1‑115 (MQ=255)                                                                                    tGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGccc                                                                                    >  1:54373/1‑132 (MQ=255)                                                                                    tGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGccc                                                                                    <  2:54373/132‑1 (MQ=255)                                                                                             cccGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTca                                                          >  2:81986/1‑149 (MQ=255)                                                                                              ccagccgtcgcGCACG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTcac                                                         >  1:35327/6‑149 (MQ=255)                                                                                              ccGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTcac                                                         >  2:66491/1‑149 (MQ=255)                                                                                               cGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCa                                                                                          >  6:331939/1‑115 (MQ=255)                                                                                                gATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTcaccc                                                       <  1:66491/149‑1 (MQ=255)                                                                                                         gcgcG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCTTCACCCACCACCAGt                                              >  5:177302/1‑149 (MQ=255)                                                                                                             g‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTggg                                          >  8:194503/1‑149 (MQ=255)                                                                                                                    tGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGc                                    >  5:32622/1‑149 (MQ=255)                                                                                                                      ggTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGccc                                  <  2:213181/149‑1 (MQ=255)                                                                                                                               cAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCcgtggcgtgg                         >  6:236852/1‑149 (MQ=255)                                                                                                                               cAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCcgtgg                              >  7:40679/1‑144 (MQ=255)                                                                                                                               cAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCcgtgg                              <  8:40679/144‑1 (MQ=255)                                                                                                                                aGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCTCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCgtggt                        <  5:236852/149‑1 (MQ=255)                                                                                                                                 gTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCAccc                                                                                           <  5:241757/81‑1 (MQ=255)                                                                                                                                 gTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCAccc                                                                                           >  6:241757/1‑81 (MQ=255)                                                                                                                                 gTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCgtggtg                       <  1:156340/149‑1 (MQ=255)                                                                                                                                 gTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCgtggtg                       >  6:106328/1‑149 (MQ=255)                                                                                                                                  tGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCGTGGTgc                      >  6:317528/1‑149 (MQ=255)                                                                                                                                  tGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCGTGGTgc                      >  1:233810/1‑149 (MQ=255)                                                                                                                                      cGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCGTGGTGCGCTg                  <  5:317528/149‑1 (MQ=255)                                                                                                                                        gCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCGTGGTGCGCTGCg                <  7:69881/149‑1 (MQ=255)                                                                                                                                            cGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCGTGGTGCGCTGCGGTCa            >  7:75440/1‑149 (MQ=255)                                                                                                                                             gCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCGTGGTGCGCTGCGGTCa            <  7:194503/148‑1 (MQ=255)                                                                                                                                             gCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCGTGGTGCGCTGCGGTCAc           <  8:75440/149‑1 (MQ=255)                                                                                                                                              cTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCGTGGTGCGCTGCg                <  6:1498/143‑1 (MQ=255)                                                                                                                                              cTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCGTGGTGCGCTGCg                >  5:1498/1‑143 (MQ=255)                                                                                                                                               taagcggGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCcgtg                               >  4:274495‑M2/8‑127 (MQ=255)                                                                                                                                               taagcggGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCcgtg                               <  3:274495‑M2/120‑1 (MQ=255)                                                                                                                                                      gCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCGTGGTGCGCTGCGGTCACTGCCTGCAg  <  6:148437/149‑1 (MQ=255)                                                                                                                                                      gCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCGTGGTGCGCTGCGGTCACTGCCTGCAg  <  1:81986/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GTTCGCCCAGGTGGCCTGCTGGCGCTTTCGGGCATCCTCGCCGAGCAAGGTGAAGACGTGGCCGCCGCTTATGCCGCCGACTTTGAACTGGACCCGATCGTCGTGCGCG‑ACGGCTGGGTGCGCATCAGTGGTCGGCGTCGCTAAGCGGGCCTAGAATACTTTTCTGCACAGCTCCCGGATCGCCGCATGACCGACAGTTTCGTCACCCAGTGCCCGCATTGCCAGACCAGCTTTCGCGTCACCCACCACCAGTTGGGCGTGGCCCGTGGCGTGGTGCGCTGCGGTCACTGCCTGCAG  >  NC_002947/5480326‑5480622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.